Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 5' | -59.9 | NC_002687.1 | + | 311745 | 0.7 | 0.712601 |
Target: 5'- gCGGCAGCUGCuGugAcGCacaCGCGGCUGu -3' miRNA: 3'- -GUCGUCGAUG-CugU-CGga-GCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 298420 | 0.7 | 0.703292 |
Target: 5'- aAGCAcGCgcgcgGCGGCGGCC--GCGGCCu -3' miRNA: 3'- gUCGU-CGa----UGCUGUCGGagCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 314407 | 0.7 | 0.721851 |
Target: 5'- cCAGguGCacggACGuuuccuCGGCCgaaCGCGGCCGc -3' miRNA: 3'- -GUCguCGa---UGCu-----GUCGGa--GCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 277757 | 0.71 | 0.618022 |
Target: 5'- uCAGCAGCU-CGGCAGCaguagcagCGCGGgCa -3' miRNA: 3'- -GUCGUCGAuGCUGUCGga------GCGCCgGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 328105 | 0.71 | 0.665608 |
Target: 5'- aAGCGGCgACGACGGCUUCGCcauggaauuGCUGg -3' miRNA: 3'- gUCGUCGaUGCUGUCGGAGCGc--------CGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 10315 | 0.71 | 0.665608 |
Target: 5'- gCAGCAGUgGCGGCGGCagUgGCGGCgGc -3' miRNA: 3'- -GUCGUCGaUGCUGUCGg-AgCGCCGgC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 303895 | 0.71 | 0.656111 |
Target: 5'- uGGUGGCUGCacuccgGACAGCCuUCGCgaaGGCCa -3' miRNA: 3'- gUCGUCGAUG------CUGUCGG-AGCG---CCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 237111 | 0.71 | 0.656111 |
Target: 5'- gCAGCGGCUG-GGCAGgCUCacGCGGCUu -3' miRNA: 3'- -GUCGUCGAUgCUGUCgGAG--CGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 39415 | 0.71 | 0.656111 |
Target: 5'- uCAGCAGCUcgcggGCGACaugagcguGGCCuUCGCgGGCUGc -3' miRNA: 3'- -GUCGUCGA-----UGCUG--------UCGG-AGCG-CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 310934 | 0.71 | 0.637073 |
Target: 5'- aCGGCGGUUGCGGCGcGCCaCGCacggcgaaauGGCCGc -3' miRNA: 3'- -GUCGUCGAUGCUGU-CGGaGCG----------CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 280946 | 0.72 | 0.570659 |
Target: 5'- aAGCAGCgucgGCGGgGGCCUggguggcggcagCgGCGGCCGg -3' miRNA: 3'- gUCGUCGa---UGCUgUCGGA------------G-CGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 295255 | 0.72 | 0.589529 |
Target: 5'- uGGC-GCUACGAgGgugcGCCUCGCGGCg- -3' miRNA: 3'- gUCGuCGAUGCUgU----CGGAGCGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 328807 | 0.72 | 0.580077 |
Target: 5'- aCGGCuGCUugGugGGCUUCGaGGUCGu -3' miRNA: 3'- -GUCGuCGAugCugUCGGAGCgCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 283184 | 0.73 | 0.524225 |
Target: 5'- gCGGCAGCaacagggGCGGCAGCaccaggCGCGGCgGg -3' miRNA: 3'- -GUCGUCGa------UGCUGUCGga----GCGCCGgC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 60651 | 0.73 | 0.515103 |
Target: 5'- aAGCAGUUcgGCaGACAGCCuUCGCuGGCCu -3' miRNA: 3'- gUCGUCGA--UG-CUGUCGG-AGCG-CCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 293540 | 0.74 | 0.470545 |
Target: 5'- aCAGCAGCaGCGACAGCagcagcccccuCUCGCGGaauacaCGa -3' miRNA: 3'- -GUCGUCGaUGCUGUCG-----------GAGCGCCg-----GC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 103390 | 0.74 | 0.479305 |
Target: 5'- uGGCGGcCUugGcuGCAGCCuUCGUGGCCu -3' miRNA: 3'- gUCGUC-GAugC--UGUCGG-AGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 114100 | 0.77 | 0.349548 |
Target: 5'- gCAGCAaagcgucGCUGCGGCAGCgguaaUCGCGGUCGc -3' miRNA: 3'- -GUCGU-------CGAUGCUGUCGg----AGCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 224463 | 0.89 | 0.063032 |
Target: 5'- gCAGCGGCaGCGGCAGCUUCGUGGCCa -3' miRNA: 3'- -GUCGUCGaUGCUGUCGGAGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 291681 | 1.07 | 0.003862 |
Target: 5'- gCAGCAGCUACGACAGCCUCGCGGCCGc -3' miRNA: 3'- -GUCGUCGAUGCUGUCGGAGCGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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