Results 41 - 60 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 5' | -59.9 | NC_002687.1 | + | 283894 | 0.68 | 0.801204 |
Target: 5'- gCAGCAGCaGCGGCugGGgCUUGUGaGCCa -3' miRNA: 3'- -GUCGUCGaUGCUG--UCgGAGCGC-CGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 284391 | 0.68 | 0.801204 |
Target: 5'- uCAGCAGgUGCaucGACAGCUUCcggaGCGGCa- -3' miRNA: 3'- -GUCGUCgAUG---CUGUCGGAG----CGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 291681 | 1.07 | 0.003862 |
Target: 5'- gCAGCAGCUACGACAGCCUCGCGGCCGc -3' miRNA: 3'- -GUCGUCGAUGCUGUCGGAGCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 292956 | 0.66 | 0.895871 |
Target: 5'- aCAGCGGgagGCGACAGCCccuUC-CGGCa- -3' miRNA: 3'- -GUCGUCga-UGCUGUCGG---AGcGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 293540 | 0.74 | 0.470545 |
Target: 5'- aCAGCAGCaGCGACAGCagcagcccccuCUCGCGGaauacaCGa -3' miRNA: 3'- -GUCGUCGaUGCUGUCG-----------GAGCGCCg-----GC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 295255 | 0.72 | 0.589529 |
Target: 5'- uGGC-GCUACGAgGgugcGCCUCGCGGCg- -3' miRNA: 3'- gUCGuCGAUGCUgU----CGGAGCGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 298265 | 0.66 | 0.901871 |
Target: 5'- -uGCGGCUGgagcCGA-AGCCUCaCGGCCu -3' miRNA: 3'- guCGUCGAU----GCUgUCGGAGcGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 298420 | 0.7 | 0.703292 |
Target: 5'- aAGCAcGCgcgcgGCGGCGGCC--GCGGCCu -3' miRNA: 3'- gUCGU-CGa----UGCUGUCGGagCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 303190 | 0.68 | 0.817564 |
Target: 5'- gCAGCAGCUGuagaAGcCCUCGuCGGCCc -3' miRNA: 3'- -GUCGUCGAUgcugUC-GGAGC-GCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 303895 | 0.71 | 0.656111 |
Target: 5'- uGGUGGCUGCacuccgGACAGCCuUCGCgaaGGCCa -3' miRNA: 3'- gUCGUCGAUG------CUGUCGG-AGCG---CCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 309184 | 0.67 | 0.840994 |
Target: 5'- uGGCAucgauGCUGCGGCGGagaCUgGCGGCg- -3' miRNA: 3'- gUCGU-----CGAUGCUGUCg--GAgCGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 309980 | 0.68 | 0.784314 |
Target: 5'- gGGCAGCuUACGcagaagaaGCAGCCugUCGCggaGGCCa -3' miRNA: 3'- gUCGUCG-AUGC--------UGUCGG--AGCG---CCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 310934 | 0.71 | 0.637073 |
Target: 5'- aCGGCGGUUGCGGCGcGCCaCGCacggcgaaauGGCCGc -3' miRNA: 3'- -GUCGUCGAUGCUGU-CGGaGCG----------CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 311447 | 0.66 | 0.901871 |
Target: 5'- aAGCA--UGUGGCGGCgCUgGCGGCCGa -3' miRNA: 3'- gUCGUcgAUGCUGUCG-GAgCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 311745 | 0.7 | 0.712601 |
Target: 5'- gCGGCAGCUGCuGugAcGCacaCGCGGCUGu -3' miRNA: 3'- -GUCGUCGAUG-CugU-CGga-GCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 314407 | 0.7 | 0.721851 |
Target: 5'- cCAGguGCacggACGuuuccuCGGCCgaaCGCGGCCGc -3' miRNA: 3'- -GUCguCGa---UGCu-----GUCGGa--GCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 316183 | 0.7 | 0.703292 |
Target: 5'- uCGGguGCgGCGGCGGCacccggCGCGGCgGa -3' miRNA: 3'- -GUCguCGaUGCUGUCGga----GCGCCGgC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 328105 | 0.71 | 0.665608 |
Target: 5'- aAGCGGCgACGACGGCUUCGCcauggaauuGCUGg -3' miRNA: 3'- gUCGUCGaUGCUGUCGGAGCGc--------CGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 328807 | 0.72 | 0.580077 |
Target: 5'- aCGGCuGCUugGugGGCUUCGaGGUCGu -3' miRNA: 3'- -GUCGuCGAugCugUCGGAGCgCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 332277 | 0.66 | 0.883276 |
Target: 5'- aCAGCGGCUcacaccauugcgGCGGCGGCgCUUG-GGCg- -3' miRNA: 3'- -GUCGUCGA------------UGCUGUCG-GAGCgCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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