miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10410 5' -59.9 NC_002687.1 + 283184 0.73 0.524225
Target:  5'- gCGGCAGCaacagggGCGGCAGCaccaggCGCGGCgGg -3'
miRNA:   3'- -GUCGUCGa------UGCUGUCGga----GCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 282707 0.66 0.876687
Target:  5'- -cGCGGaggauaGCGGCAGUCUCcgacGCGGUCGg -3'
miRNA:   3'- guCGUCga----UGCUGUCGGAG----CGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 282159 0.68 0.817564
Target:  5'- gCGGCGGCaGCGGCgggaguagGGCCU-GCGGCgGc -3'
miRNA:   3'- -GUCGUCGaUGCUG--------UCGGAgCGCCGgC- -5'
10410 5' -59.9 NC_002687.1 + 282076 0.66 0.901871
Target:  5'- uGGCAGCaGCGGCGGC-UCG-GGUCc -3'
miRNA:   3'- gUCGUCGaUGCUGUCGgAGCgCCGGc -5'
10410 5' -59.9 NC_002687.1 + 280946 0.72 0.570659
Target:  5'- aAGCAGCgucgGCGGgGGCCUggguggcggcagCgGCGGCCGg -3'
miRNA:   3'- gUCGUCGa---UGCUgUCGGA------------G-CGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 277757 0.71 0.618022
Target:  5'- uCAGCAGCU-CGGCAGCaguagcagCGCGGgCa -3'
miRNA:   3'- -GUCGUCGAuGCUGUCGga------GCGCCgGc -5'
10410 5' -59.9 NC_002687.1 + 275294 0.68 0.820767
Target:  5'- -cGCuGCUuagAgGACGGCgcgacguccauguauCUCGCGGCCGa -3'
miRNA:   3'- guCGuCGA---UgCUGUCG---------------GAGCGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 261994 0.66 0.889041
Target:  5'- gCAGCGGCUgucugugGC-ACAGuUUUCGUGGCCa -3'
miRNA:   3'- -GUCGUCGA-------UGcUGUC-GGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 258828 0.69 0.74917
Target:  5'- -cGguGCUGCGACGuCUUCGUGGCa- -3'
miRNA:   3'- guCguCGAUGCUGUcGGAGCGCCGgc -5'
10410 5' -59.9 NC_002687.1 + 256511 0.68 0.817564
Target:  5'- gAGUAGaCgucGCGgcACAGCUUCGCGGCUc -3'
miRNA:   3'- gUCGUC-Ga--UGC--UGUCGGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 254865 0.66 0.876687
Target:  5'- aGGCAG--AUGGCGGCCUUGuCGGCa- -3'
miRNA:   3'- gUCGUCgaUGCUGUCGGAGC-GCCGgc -5'
10410 5' -59.9 NC_002687.1 + 237111 0.71 0.656111
Target:  5'- gCAGCGGCUG-GGCAGgCUCacGCGGCUu -3'
miRNA:   3'- -GUCGUCGAUgCUGUCgGAG--CGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 224463 0.89 0.063032
Target:  5'- gCAGCGGCaGCGGCAGCUUCGUGGCCa -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 223560 0.66 0.901871
Target:  5'- gCAGCAGUUcgGGCAGCUcgggcagCGCGGUCc -3'
miRNA:   3'- -GUCGUCGAugCUGUCGGa------GCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 208204 0.67 0.869908
Target:  5'- gCAGCAGCaGCGACAGCa--GCaGCg- -3'
miRNA:   3'- -GUCGUCGaUGCUGUCGgagCGcCGgc -5'
10410 5' -59.9 NC_002687.1 + 200113 0.66 0.895871
Target:  5'- uGGUgccGGCgACGACGGCCgCGC-GCCGu -3'
miRNA:   3'- gUCG---UCGaUGCUGUCGGaGCGcCGGC- -5'
10410 5' -59.9 NC_002687.1 + 178667 0.69 0.74917
Target:  5'- aCGGUAaCUACGACuuuuucGuCCUCGUGGCCa -3'
miRNA:   3'- -GUCGUcGAUGCUGu-----C-GGAGCGCCGGc -5'
10410 5' -59.9 NC_002687.1 + 173293 0.66 0.903632
Target:  5'- cCAGCAGCcucgauagcgcggGCGACAGCagagguagagcaggCUCGgaaagaGGCCGa -3'
miRNA:   3'- -GUCGUCGa------------UGCUGUCG--------------GAGCg-----CCGGC- -5'
10410 5' -59.9 NC_002687.1 + 168755 0.66 0.876687
Target:  5'- cCGGuCGGCUccugUGuCAGCCUCuucuuuuuuGCGGCCGg -3'
miRNA:   3'- -GUC-GUCGAu---GCuGUCGGAG---------CGCCGGC- -5'
10410 5' -59.9 NC_002687.1 + 159953 0.67 0.848483
Target:  5'- gGGCGGCcaaGGCAGCCgcCGCcaaGGCCa -3'
miRNA:   3'- gUCGUCGaugCUGUCGGa-GCG---CCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.