Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 5' | -59.9 | NC_002687.1 | + | 332277 | 0.66 | 0.883276 |
Target: 5'- aCAGCGGCUcacaccauugcgGCGGCGGCgCUUG-GGCg- -3' miRNA: 3'- -GUCGUCGA------------UGCUGUCG-GAGCgCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 254865 | 0.66 | 0.876687 |
Target: 5'- aGGCAG--AUGGCGGCCUUGuCGGCa- -3' miRNA: 3'- gUCGUCgaUGCUGUCGGAGC-GCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 168755 | 0.66 | 0.876687 |
Target: 5'- cCGGuCGGCUccugUGuCAGCCUCuucuuuuuuGCGGCCGg -3' miRNA: 3'- -GUC-GUCGAu---GCuGUCGGAG---------CGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 41332 | 0.67 | 0.862945 |
Target: 5'- uCAGCAGCU-CGACGcuuucGCCagaGCGGCg- -3' miRNA: 3'- -GUCGUCGAuGCUGU-----CGGag-CGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 309980 | 0.68 | 0.784314 |
Target: 5'- gGGCAGCuUACGcagaagaaGCAGCCugUCGCggaGGCCa -3' miRNA: 3'- gUCGUCG-AUGC--------UGUCGG--AGCG---CCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 154316 | 0.68 | 0.79113 |
Target: 5'- uCGGCgAGCUGCGcaacugcgaccaaGCGGUCgccaaguUCGUGGCCGa -3' miRNA: 3'- -GUCG-UCGAUGC-------------UGUCGG-------AGCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 159226 | 0.68 | 0.801204 |
Target: 5'- uGGUAGCUuucACGuuGGCCUUGUcgacGGCCGc -3' miRNA: 3'- gUCGUCGA---UGCugUCGGAGCG----CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 303190 | 0.68 | 0.817564 |
Target: 5'- gCAGCAGCUGuagaAGcCCUCGuCGGCCc -3' miRNA: 3'- -GUCGUCGAUgcugUC-GGAGC-GCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 256511 | 0.68 | 0.817564 |
Target: 5'- gAGUAGaCgucGCGgcACAGCUUCGCGGCUc -3' miRNA: 3'- gUCGUC-Ga--UGC--UGUCGGAGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 309184 | 0.67 | 0.840994 |
Target: 5'- uGGCAucgauGCUGCGGCGGagaCUgGCGGCg- -3' miRNA: 3'- gUCGU-----CGAUGCUGUCg--GAgCGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 178667 | 0.69 | 0.74917 |
Target: 5'- aCGGUAaCUACGACuuuuucGuCCUCGUGGCCa -3' miRNA: 3'- -GUCGUcGAUGCUGu-----C-GGAGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 158805 | 0.7 | 0.712601 |
Target: 5'- aCGGCGGCgacaACGACGgaccGCCgUCGCcGCCGg -3' miRNA: 3'- -GUCGUCGa---UGCUGU----CGG-AGCGcCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 311745 | 0.7 | 0.712601 |
Target: 5'- gCGGCAGCUGCuGugAcGCacaCGCGGCUGu -3' miRNA: 3'- -GUCGUCGAUG-CugU-CGga-GCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 328105 | 0.71 | 0.665608 |
Target: 5'- aAGCGGCgACGACGGCUUCGCcauggaauuGCUGg -3' miRNA: 3'- gUCGUCGaUGCUGUCGGAGCGc--------CGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 10315 | 0.71 | 0.665608 |
Target: 5'- gCAGCAGUgGCGGCGGCagUgGCGGCgGc -3' miRNA: 3'- -GUCGUCGaUGCUGUCGg-AgCGCCGgC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 310934 | 0.71 | 0.637073 |
Target: 5'- aCGGCGGUUGCGGCGcGCCaCGCacggcgaaauGGCCGc -3' miRNA: 3'- -GUCGUCGAUGCUGU-CGGaGCG----------CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 280946 | 0.72 | 0.570659 |
Target: 5'- aAGCAGCgucgGCGGgGGCCUggguggcggcagCgGCGGCCGg -3' miRNA: 3'- gUCGUCGa---UGCUgUCGGA------------G-CGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 283184 | 0.73 | 0.524225 |
Target: 5'- gCGGCAGCaacagggGCGGCAGCaccaggCGCGGCgGg -3' miRNA: 3'- -GUCGUCGa------UGCUGUCGga----GCGCCGgC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 293540 | 0.74 | 0.470545 |
Target: 5'- aCAGCAGCaGCGACAGCagcagcccccuCUCGCGGaauacaCGa -3' miRNA: 3'- -GUCGUCGaUGCUGUCG-----------GAGCGCCg-----GC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 11523 | 0.66 | 0.90767 |
Target: 5'- aUAGCAGCUGCGACAcGa---GCGGUa- -3' miRNA: 3'- -GUCGUCGAUGCUGU-CggagCGCCGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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