Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10410 | 5' | -59.9 | NC_002687.1 | + | 275294 | 0.68 | 0.820767 |
Target: 5'- -cGCuGCUuagAgGACGGCgcgacguccauguauCUCGCGGCCGa -3' miRNA: 3'- guCGuCGA---UgCUGUCG---------------GAGCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 282159 | 0.68 | 0.817564 |
Target: 5'- gCGGCGGCaGCGGCgggaguagGGCCU-GCGGCgGc -3' miRNA: 3'- -GUCGUCGaUGCUG--------UCGGAgCGCCGgC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 12182 | 0.68 | 0.817564 |
Target: 5'- gAGCAGCaGCGGCAGCggaaGCGGUa- -3' miRNA: 3'- gUCGUCGaUGCUGUCGgag-CGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 303190 | 0.68 | 0.817564 |
Target: 5'- gCAGCAGCUGuagaAGcCCUCGuCGGCCc -3' miRNA: 3'- -GUCGUCGAUgcugUC-GGAGC-GCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 256511 | 0.68 | 0.817564 |
Target: 5'- gAGUAGaCgucGCGgcACAGCUUCGCGGCUc -3' miRNA: 3'- gUCGUC-Ga--UGC--UGUCGGAGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 25431 | 0.68 | 0.809454 |
Target: 5'- gAGUAccGCUACGACGGCgUacacuccgcggaUGUGGCCGu -3' miRNA: 3'- gUCGU--CGAUGCUGUCGgA------------GCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 18336 | 0.68 | 0.801204 |
Target: 5'- gGGCGGUgAUGACAGUgaCGCcguGGCCGa -3' miRNA: 3'- gUCGUCGaUGCUGUCGgaGCG---CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 283894 | 0.68 | 0.801204 |
Target: 5'- gCAGCAGCaGCGGCugGGgCUUGUGaGCCa -3' miRNA: 3'- -GUCGUCGaUGCUG--UCgGAGCGC-CGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 284391 | 0.68 | 0.801204 |
Target: 5'- uCAGCAGgUGCaucGACAGCUUCcggaGCGGCa- -3' miRNA: 3'- -GUCGUCgAUG---CUGUCGGAG----CGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 159226 | 0.68 | 0.801204 |
Target: 5'- uGGUAGCUuucACGuuGGCCUUGUcgacGGCCGc -3' miRNA: 3'- gUCGUCGA---UGCugUCGGAGCG----CCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 10439 | 0.68 | 0.792821 |
Target: 5'- aAGCAGUaGCGGuagcauCGGCCUCG-GGCCc -3' miRNA: 3'- gUCGUCGaUGCU------GUCGGAGCgCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 154316 | 0.68 | 0.79113 |
Target: 5'- uCGGCgAGCUGCGcaacugcgaccaaGCGGUCgccaaguUCGUGGCCGa -3' miRNA: 3'- -GUCG-UCGAUGC-------------UGUCGG-------AGCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 309980 | 0.68 | 0.784314 |
Target: 5'- gGGCAGCuUACGcagaagaaGCAGCCugUCGCggaGGCCa -3' miRNA: 3'- gUCGUCG-AUGC--------UGUCGG--AGCG---CCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 63705 | 0.69 | 0.76695 |
Target: 5'- aCGGCAGC-ACGGCucuccacGUUUCGCGGUCu -3' miRNA: 3'- -GUCGUCGaUGCUGu------CGGAGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 153254 | 0.69 | 0.76695 |
Target: 5'- gCAGCAGCaGCaGCGGCCUCGUccuGGUa- -3' miRNA: 3'- -GUCGUCGaUGcUGUCGGAGCG---CCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 258828 | 0.69 | 0.74917 |
Target: 5'- -cGguGCUGCGACGuCUUCGUGGCa- -3' miRNA: 3'- guCguCGAUGCUGUcGGAGCGCCGgc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 178667 | 0.69 | 0.74917 |
Target: 5'- aCGGUAaCUACGACuuuuucGuCCUCGUGGCCa -3' miRNA: 3'- -GUCGUcGAUGCUGu-----C-GGAGCGCCGGc -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 159175 | 0.69 | 0.740143 |
Target: 5'- cCGGCGGCgACGGCGGUCcgucguugUCGCcGCCGu -3' miRNA: 3'- -GUCGUCGaUGCUGUCGG--------AGCGcCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 314407 | 0.7 | 0.721851 |
Target: 5'- cCAGguGCacggACGuuuccuCGGCCgaaCGCGGCCGc -3' miRNA: 3'- -GUCguCGa---UGCu-----GUCGGa--GCGCCGGC- -5' |
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10410 | 5' | -59.9 | NC_002687.1 | + | 311745 | 0.7 | 0.712601 |
Target: 5'- gCGGCAGCUGCuGugAcGCacaCGCGGCUGu -3' miRNA: 3'- -GUCGUCGAUG-CugU-CGga-GCGCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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