miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10411 3' -52.3 NC_002687.1 + 3966 0.66 0.997567
Target:  5'- gGACGGAUGGAGGgauugACCGGGggcGGCGa- -3'
miRNA:   3'- -CUGUCUACUUCU-----UGGCCCga-CUGUga -5'
10411 3' -52.3 NC_002687.1 + 55516 0.66 0.997138
Target:  5'- -cCGGAUGAcauAGAGCgGGGUgcgUGGCAUg -3'
miRNA:   3'- cuGUCUACU---UCUUGgCCCG---ACUGUGa -5'
10411 3' -52.3 NC_002687.1 + 297833 0.67 0.996852
Target:  5'- cGCAGAUGGAGGucuCCGGaccccgaacgcuugcGCUGAC-CUu -3'
miRNA:   3'- cUGUCUACUUCUu--GGCC---------------CGACUGuGA- -5'
10411 3' -52.3 NC_002687.1 + 130979 0.67 0.995258
Target:  5'- cACAGAUGAAGucGACgaGGGCcucgaagaagagguUGACACa -3'
miRNA:   3'- cUGUCUACUUC--UUGg-CCCG--------------ACUGUGa -5'
10411 3' -52.3 NC_002687.1 + 273905 0.68 0.993062
Target:  5'- uGACAGAUGuu--GCCaGGGCUGugGg- -3'
miRNA:   3'- -CUGUCUACuucuUGG-CCCGACugUga -5'
10411 3' -52.3 NC_002687.1 + 99571 0.68 0.993062
Target:  5'- cGAUagAGAUGAAGGAuCUGGuGCaGACGCUu -3'
miRNA:   3'- -CUG--UCUACUUCUU-GGCC-CGaCUGUGA- -5'
10411 3' -52.3 NC_002687.1 + 109040 0.68 0.993062
Target:  5'- -uCGGcgGAAGcAUCGGcGCUGACGCc -3'
miRNA:   3'- cuGUCuaCUUCuUGGCC-CGACUGUGa -5'
10411 3' -52.3 NC_002687.1 + 87738 0.68 0.991748
Target:  5'- aGACGGGcugcucaagcggucUGggGucaacGCCGGGCgugUGGCGCUg -3'
miRNA:   3'- -CUGUCU--------------ACuuCu----UGGCCCG---ACUGUGA- -5'
10411 3' -52.3 NC_002687.1 + 104616 0.68 0.990963
Target:  5'- aGCGGAUGAAG-ACCGaGCUGuaucuGCACg -3'
miRNA:   3'- cUGUCUACUUCuUGGCcCGAC-----UGUGa -5'
10411 3' -52.3 NC_002687.1 + 295702 0.69 0.98529
Target:  5'- uGCAGcgGAGcAGCgGGGCUGAUGCc -3'
miRNA:   3'- cUGUCuaCUUcUUGgCCCGACUGUGa -5'
10411 3' -52.3 NC_002687.1 + 176583 0.69 0.979497
Target:  5'- cACAuAUGGcauGGGACCGGGCUGAUucaGCa -3'
miRNA:   3'- cUGUcUACU---UCUUGGCCCGACUG---UGa -5'
10411 3' -52.3 NC_002687.1 + 10494 0.72 0.939227
Target:  5'- gGACGGGaacGGGAGCCGGGUccggUGGCACa -3'
miRNA:   3'- -CUGUCUac-UUCUUGGCCCG----ACUGUGa -5'
10411 3' -52.3 NC_002687.1 + 293183 1.07 0.017239
Target:  5'- gGACAGAUGAAGAACCGGGCUGACACUu -3'
miRNA:   3'- -CUGUCUACUUCUUGGCCCGACUGUGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.