miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10414 5' -52.4 NC_002687.1 + 89059 0.66 0.998064
Target:  5'- uGGUGGUGGuGGUggUGGUGUcugucGCGggGg -3'
miRNA:   3'- uCUACCGCC-UCAaaACCGCG-----UGCuuU- -5'
10414 5' -52.4 NC_002687.1 + 173622 0.66 0.998064
Target:  5'- cGGA-GGCGGGGgcggaGGCGgaCGCGGAAg -3'
miRNA:   3'- -UCUaCCGCCUCaaaa-CCGC--GUGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 323950 0.66 0.998064
Target:  5'- uAGAUGGCGGAucuugGUUUUuGCGCucuUGAc- -3'
miRNA:   3'- -UCUACCGCCU-----CAAAAcCGCGu--GCUuu -5'
10414 5' -52.4 NC_002687.1 + 325101 0.66 0.998064
Target:  5'- uAGAUGGCGGAucuugGUUUUuGCGCucuUGAc- -3'
miRNA:   3'- -UCUACCGCCU-----CAAAAcCGCGu--GCUuu -5'
10414 5' -52.4 NC_002687.1 + 173592 0.66 0.997706
Target:  5'- cGGA-GGCGGAGgcgggGGCGgagGCGGAGg -3'
miRNA:   3'- -UCUaCCGCCUCaaaa-CCGCg--UGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 130721 0.66 0.997294
Target:  5'- cGGUGGUGGuGGUggcggUGGCGgugGCGAAAg -3'
miRNA:   3'- uCUACCGCC-UCAaa---ACCGCg--UGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 238451 0.66 0.996286
Target:  5'- uGGcAUGGaaGGAGUUcaGGUGCugGAGAa -3'
miRNA:   3'- -UC-UACCg-CCUCAAaaCCGCGugCUUU- -5'
10414 5' -52.4 NC_002687.1 + 274423 0.66 0.996286
Target:  5'- -cGUGGCGGuuGUUcUGaCGCACGGAGg -3'
miRNA:   3'- ucUACCGCCu-CAAaACcGCGUGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 224320 0.66 0.996228
Target:  5'- uGAUGGCGGuggcagugcugguGGUggUGGCGaugGCGAu- -3'
miRNA:   3'- uCUACCGCC-------------UCAaaACCGCg--UGCUuu -5'
10414 5' -52.4 NC_002687.1 + 150950 0.66 0.996051
Target:  5'- aAGAacagGGCGGGaaacuacugGGCGCACGAc- -3'
miRNA:   3'- -UCUa---CCGCCUcaaaa----CCGCGUGCUuu -5'
10414 5' -52.4 NC_002687.1 + 10362 0.67 0.994987
Target:  5'- cGAaGGCGGAGUggcugcGGCG-ACGggGg -3'
miRNA:   3'- uCUaCCGCCUCAaaa---CCGCgUGCuuU- -5'
10414 5' -52.4 NC_002687.1 + 134658 0.67 0.994211
Target:  5'- -cGUGGCGGAGagcgucgcUGGCGC-UGAAAa -3'
miRNA:   3'- ucUACCGCCUCaaa-----ACCGCGuGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 243506 0.67 0.993701
Target:  5'- gGGGUGGCGGAcGgaucgaccacGCGCugGGAAa -3'
miRNA:   3'- -UCUACCGCCU-Caaaac-----CGCGugCUUU- -5'
10414 5' -52.4 NC_002687.1 + 296175 0.67 0.992771
Target:  5'- cGGUGGCGGAGcugagGGUGUugcaagccgcgguggACGAAGa -3'
miRNA:   3'- uCUACCGCCUCaaaa-CCGCG---------------UGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 263002 0.67 0.99237
Target:  5'- uGGUGGCcgGGAGUUUcUGGCaGaCGCGAu- -3'
miRNA:   3'- uCUACCG--CCUCAAA-ACCG-C-GUGCUuu -5'
10414 5' -52.4 NC_002687.1 + 226813 0.67 0.991289
Target:  5'- cGGUGGCGGuGgcggUGGCGgugGCGGAGc -3'
miRNA:   3'- uCUACCGCCuCaaa-ACCGCg--UGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 291964 0.68 0.990091
Target:  5'- ---cGGCGGGGcuacugUUUGGUGCcCGGAAg -3'
miRNA:   3'- ucuaCCGCCUCa-----AAACCGCGuGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 224212 0.68 0.985713
Target:  5'- cGGUGGCGGuGgcggUGGCGaugGCGAu- -3'
miRNA:   3'- uCUACCGCCuCaaa-ACCGCg--UGCUuu -5'
10414 5' -52.4 NC_002687.1 + 225581 0.68 0.983965
Target:  5'- uGGGgccgGaGCGGGGgg-UGGUGCugGAGAc -3'
miRNA:   3'- -UCUa---C-CGCCUCaaaACCGCGugCUUU- -5'
10414 5' -52.4 NC_002687.1 + 224082 0.69 0.979989
Target:  5'- cGGAUGGUGGuGGUgcUGGCGgACGu-- -3'
miRNA:   3'- -UCUACCGCC-UCAaaACCGCgUGCuuu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.