miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10414 5' -52.4 NC_002687.1 + 10362 0.67 0.994987
Target:  5'- cGAaGGCGGAGUggcugcGGCG-ACGggGg -3'
miRNA:   3'- uCUaCCGCCUCAaaa---CCGCgUGCuuU- -5'
10414 5' -52.4 NC_002687.1 + 89059 0.66 0.998064
Target:  5'- uGGUGGUGGuGGUggUGGUGUcugucGCGggGg -3'
miRNA:   3'- uCUACCGCC-UCAaaACCGCG-----UGCuuU- -5'
10414 5' -52.4 NC_002687.1 + 130721 0.66 0.997294
Target:  5'- cGGUGGUGGuGGUggcggUGGCGgugGCGAAAg -3'
miRNA:   3'- uCUACCGCC-UCAaa---ACCGCg--UGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 134658 0.67 0.994211
Target:  5'- -cGUGGCGGAGagcgucgcUGGCGC-UGAAAa -3'
miRNA:   3'- ucUACCGCCUCaaa-----ACCGCGuGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 150950 0.66 0.996051
Target:  5'- aAGAacagGGCGGGaaacuacugGGCGCACGAc- -3'
miRNA:   3'- -UCUa---CCGCCUcaaaa----CCGCGUGCUuu -5'
10414 5' -52.4 NC_002687.1 + 154217 0.76 0.727406
Target:  5'- gGGGUGGCGu-GUUccccUGGCGCACGAAGa -3'
miRNA:   3'- -UCUACCGCcuCAAa---ACCGCGUGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 173592 0.66 0.997706
Target:  5'- cGGA-GGCGGAGgcgggGGCGgagGCGGAGg -3'
miRNA:   3'- -UCUaCCGCCUCaaaa-CCGCg--UGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 173622 0.66 0.998064
Target:  5'- cGGA-GGCGGGGgcggaGGCGgaCGCGGAAg -3'
miRNA:   3'- -UCUaCCGCCUCaaaa-CCGC--GUGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 211940 0.79 0.566785
Target:  5'- uGAUGGUGGAGacggaGGCGCACGGAu -3'
miRNA:   3'- uCUACCGCCUCaaaa-CCGCGUGCUUu -5'
10414 5' -52.4 NC_002687.1 + 224082 0.69 0.979989
Target:  5'- cGGAUGGUGGuGGUgcUGGCGgACGu-- -3'
miRNA:   3'- -UCUACCGCC-UCAaaACCGCgUGCuuu -5'
10414 5' -52.4 NC_002687.1 + 224116 0.7 0.960267
Target:  5'- cGGUGGCGGuGgcgcUGGCGCugGc-- -3'
miRNA:   3'- uCUACCGCCuCaaa-ACCGCGugCuuu -5'
10414 5' -52.4 NC_002687.1 + 224140 0.7 0.960267
Target:  5'- cGGUGGCGGuGgcgcUGGCGCugGc-- -3'
miRNA:   3'- uCUACCGCCuCaaa-ACCGCGugCuuu -5'
10414 5' -52.4 NC_002687.1 + 224212 0.68 0.985713
Target:  5'- cGGUGGCGGuGgcggUGGCGaugGCGAu- -3'
miRNA:   3'- uCUACCGCCuCaaa-ACCGCg--UGCUuu -5'
10414 5' -52.4 NC_002687.1 + 224320 0.66 0.996228
Target:  5'- uGAUGGCGGuggcagugcugguGGUggUGGCGaugGCGAu- -3'
miRNA:   3'- uCUACCGCC-------------UCAaaACCGCg--UGCUuu -5'
10414 5' -52.4 NC_002687.1 + 225020 0.69 0.972711
Target:  5'- cGGGUGGUGGcGUg--GGCGUcCGAGAc -3'
miRNA:   3'- -UCUACCGCCuCAaaaCCGCGuGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 225581 0.68 0.983965
Target:  5'- uGGGgccgGaGCGGGGgg-UGGUGCugGAGAc -3'
miRNA:   3'- -UCUa---C-CGCCUCaaaACCGCGugCUUU- -5'
10414 5' -52.4 NC_002687.1 + 226813 0.67 0.991289
Target:  5'- cGGUGGCGGuGgcggUGGCGgugGCGGAGc -3'
miRNA:   3'- uCUACCGCCuCaaa-ACCGCg--UGCUUU- -5'
10414 5' -52.4 NC_002687.1 + 238451 0.66 0.996286
Target:  5'- uGGcAUGGaaGGAGUUcaGGUGCugGAGAa -3'
miRNA:   3'- -UC-UACCg-CCUCAAaaCCGCGugCUUU- -5'
10414 5' -52.4 NC_002687.1 + 243506 0.67 0.993701
Target:  5'- gGGGUGGCGGAcGgaucgaccacGCGCugGGAAa -3'
miRNA:   3'- -UCUACCGCCU-Caaaac-----CGCGugCUUU- -5'
10414 5' -52.4 NC_002687.1 + 263002 0.67 0.99237
Target:  5'- uGGUGGCcgGGAGUUUcUGGCaGaCGCGAu- -3'
miRNA:   3'- uCUACCG--CCUCAAA-ACCG-C-GUGCUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.