Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 10414 | 5' | -52.4 | NC_002687.1 | + | 274423 | 0.66 | 0.996286 |
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Target: 5'- -cGUGGCGGuuGUUcUGaCGCACGGAGg -3' miRNA: 3'- ucUACCGCCu-CAAaACcGCGUGCUUU- -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 291964 | 0.68 | 0.990091 |
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Target: 5'- ---cGGCGGGGcuacugUUUGGUGCcCGGAAg -3' miRNA: 3'- ucuaCCGCCUCa-----AAACCGCGuGCUUU- -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 292673 | 0.78 | 0.667722 |
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Target: 5'- -uGUGGCGGuGGUUUUGG-GCACGAAAg -3' miRNA: 3'- ucUACCGCC-UCAAAACCgCGUGCUUU- -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 292787 | 0.71 | 0.930049 |
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Target: 5'- cGGUGGCGGccgc--GGCGCACGGGc -3' miRNA: 3'- uCUACCGCCucaaaaCCGCGUGCUUu -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 295550 | 1.07 | 0.016606 |
|
Target: 5'- aAGAUGGCGGAGUUUUGGCGCACGAAAg -3' miRNA: 3'- -UCUACCGCCUCAAAACCGCGUGCUUU- -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 296175 | 0.67 | 0.992771 |
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Target: 5'- cGGUGGCGGAGcugagGGUGUugcaagccgcgguggACGAAGa -3' miRNA: 3'- uCUACCGCCUCaaaa-CCGCG---------------UGCUUU- -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 307640 | 0.69 | 0.977745 |
|
Target: 5'- cGGUGGCGGuGg--UGGUGCugGc-- -3' miRNA: 3'- uCUACCGCCuCaaaACCGCGugCuuu -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 310762 | 0.69 | 0.979989 |
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Target: 5'- cGAUGGCGG-GUa---GUGCACGGAAg -3' miRNA: 3'- uCUACCGCCuCAaaacCGCGUGCUUU- -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 323950 | 0.66 | 0.998064 |
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Target: 5'- uAGAUGGCGGAucuugGUUUUuGCGCucuUGAc- -3' miRNA: 3'- -UCUACCGCCU-----CAAAAcCGCGu--GCUuu -5' |
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| 10414 | 5' | -52.4 | NC_002687.1 | + | 325101 | 0.66 | 0.998064 |
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Target: 5'- uAGAUGGCGGAucuugGUUUUuGCGCucuUGAc- -3' miRNA: 3'- -UCUACCGCCU-----CAAAAcCGCGu--GCUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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