miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10415 5' -54.7 NC_002687.1 + 279959 0.66 0.992657
Target:  5'- gCUCUCgaAGAUUCUGGCCgaucauucAGCaUCGAg -3'
miRNA:   3'- -GAGAGggUUUAAGGCCGG--------UCGcAGCU- -5'
10415 5' -54.7 NC_002687.1 + 181518 0.66 0.992657
Target:  5'- aUCUCCCGGGcUCUGGCgAGCuccaGAg -3'
miRNA:   3'- gAGAGGGUUUaAGGCCGgUCGcag-CU- -5'
10415 5' -54.7 NC_002687.1 + 153973 0.66 0.991645
Target:  5'- -gCUCgCCGAcgugcAUUCCGGUCAGCGa--- -3'
miRNA:   3'- gaGAG-GGUU-----UAAGGCCGGUCGCagcu -5'
10415 5' -54.7 NC_002687.1 + 41180 0.66 0.991211
Target:  5'- aCUCUCCCGcuguUUCCGGUaaauaaucauccaGGCGagGAa -3'
miRNA:   3'- -GAGAGGGUuu--AAGGCCGg------------UCGCagCU- -5'
10415 5' -54.7 NC_002687.1 + 81933 0.66 0.990526
Target:  5'- gUCUUCCAcaagCCGGCCGGCa---- -3'
miRNA:   3'- gAGAGGGUuuaaGGCCGGUCGcagcu -5'
10415 5' -54.7 NC_002687.1 + 253752 0.66 0.987938
Target:  5'- uUCUCCCug---CCGGCC-GUG-CGAa -3'
miRNA:   3'- gAGAGGGuuuaaGGCCGGuCGCaGCU- -5'
10415 5' -54.7 NC_002687.1 + 100390 0.67 0.984833
Target:  5'- gCUCUCCCAAGauaCGGCacaGGUaUCGAu -3'
miRNA:   3'- -GAGAGGGUUUaagGCCGg--UCGcAGCU- -5'
10415 5' -54.7 NC_002687.1 + 48132 0.67 0.982885
Target:  5'- -cCUCCgguggcgCAGGUgugCCGGCCAGCGaUCa- -3'
miRNA:   3'- gaGAGG-------GUUUAa--GGCCGGUCGC-AGcu -5'
10415 5' -54.7 NC_002687.1 + 40096 0.67 0.981155
Target:  5'- aCUCUCCCA---UCUGGUCuucugcugauGCGUUGGc -3'
miRNA:   3'- -GAGAGGGUuuaAGGCCGGu---------CGCAGCU- -5'
10415 5' -54.7 NC_002687.1 + 47528 0.68 0.969087
Target:  5'- cCUCgggcggCgCAGAUgugCCGGCCAGCGaUCa- -3'
miRNA:   3'- -GAGa-----GgGUUUAa--GGCCGGUCGC-AGcu -5'
10415 5' -54.7 NC_002687.1 + 182362 0.68 0.969087
Target:  5'- gUCUUCCcuGUcCCGGCCcucGGCGaUCGAu -3'
miRNA:   3'- gAGAGGGuuUAaGGCCGG---UCGC-AGCU- -5'
10415 5' -54.7 NC_002687.1 + 254166 0.71 0.890427
Target:  5'- cCUCgCCCAAcaggGUUCgGGCCAGCGcCa- -3'
miRNA:   3'- -GAGaGGGUU----UAAGgCCGGUCGCaGcu -5'
10415 5' -54.7 NC_002687.1 + 164941 0.72 0.877117
Target:  5'- uCUUUCCCGGug-CCGaGCCGGUGUCu- -3'
miRNA:   3'- -GAGAGGGUUuaaGGC-CGGUCGCAGcu -5'
10415 5' -54.7 NC_002687.1 + 295736 1.09 0.008446
Target:  5'- cCUCUCCCAAAUUCCGGCCAGCGUCGAg -3'
miRNA:   3'- -GAGAGGGUUUAAGGCCGGUCGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.