Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10415 | 5' | -54.7 | NC_002687.1 | + | 40096 | 0.67 | 0.981155 |
Target: 5'- aCUCUCCCA---UCUGGUCuucugcugauGCGUUGGc -3' miRNA: 3'- -GAGAGGGUuuaAGGCCGGu---------CGCAGCU- -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 41180 | 0.66 | 0.991211 |
Target: 5'- aCUCUCCCGcuguUUCCGGUaaauaaucauccaGGCGagGAa -3' miRNA: 3'- -GAGAGGGUuu--AAGGCCGg------------UCGCagCU- -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 47528 | 0.68 | 0.969087 |
Target: 5'- cCUCgggcggCgCAGAUgugCCGGCCAGCGaUCa- -3' miRNA: 3'- -GAGa-----GgGUUUAa--GGCCGGUCGC-AGcu -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 48132 | 0.67 | 0.982885 |
Target: 5'- -cCUCCgguggcgCAGGUgugCCGGCCAGCGaUCa- -3' miRNA: 3'- gaGAGG-------GUUUAa--GGCCGGUCGC-AGcu -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 81933 | 0.66 | 0.990526 |
Target: 5'- gUCUUCCAcaagCCGGCCGGCa---- -3' miRNA: 3'- gAGAGGGUuuaaGGCCGGUCGcagcu -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 100390 | 0.67 | 0.984833 |
Target: 5'- gCUCUCCCAAGauaCGGCacaGGUaUCGAu -3' miRNA: 3'- -GAGAGGGUUUaagGCCGg--UCGcAGCU- -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 153973 | 0.66 | 0.991645 |
Target: 5'- -gCUCgCCGAcgugcAUUCCGGUCAGCGa--- -3' miRNA: 3'- gaGAG-GGUU-----UAAGGCCGGUCGCagcu -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 164941 | 0.72 | 0.877117 |
Target: 5'- uCUUUCCCGGug-CCGaGCCGGUGUCu- -3' miRNA: 3'- -GAGAGGGUUuaaGGC-CGGUCGCAGcu -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 181518 | 0.66 | 0.992657 |
Target: 5'- aUCUCCCGGGcUCUGGCgAGCuccaGAg -3' miRNA: 3'- gAGAGGGUUUaAGGCCGgUCGcag-CU- -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 182362 | 0.68 | 0.969087 |
Target: 5'- gUCUUCCcuGUcCCGGCCcucGGCGaUCGAu -3' miRNA: 3'- gAGAGGGuuUAaGGCCGG---UCGC-AGCU- -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 253752 | 0.66 | 0.987938 |
Target: 5'- uUCUCCCug---CCGGCC-GUG-CGAa -3' miRNA: 3'- gAGAGGGuuuaaGGCCGGuCGCaGCU- -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 254166 | 0.71 | 0.890427 |
Target: 5'- cCUCgCCCAAcaggGUUCgGGCCAGCGcCa- -3' miRNA: 3'- -GAGaGGGUU----UAAGgCCGGUCGCaGcu -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 279959 | 0.66 | 0.992657 |
Target: 5'- gCUCUCgaAGAUUCUGGCCgaucauucAGCaUCGAg -3' miRNA: 3'- -GAGAGggUUUAAGGCCGG--------UCGcAGCU- -5' |
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10415 | 5' | -54.7 | NC_002687.1 | + | 295736 | 1.09 | 0.008446 |
Target: 5'- cCUCUCCCAAAUUCCGGCCAGCGUCGAg -3' miRNA: 3'- -GAGAGGGUUUAAGGCCGGUCGCAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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