miRNA display CGI


Results 1 - 20 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10417 3' -56.3 NC_002687.1 + 223840 0.66 0.98399
Target:  5'- -cGCCCCCGCcACCGcaucccgAACuCCGCcaGCa -3'
miRNA:   3'- guUGGGGGUGaUGGCa------UUGcGGCG--CG- -5'
10417 3' -56.3 NC_002687.1 + 194110 0.66 0.98399
Target:  5'- uCAGCUgagCgCACUGCUGUcAACGCCGUccGCc -3'
miRNA:   3'- -GUUGG---GgGUGAUGGCA-UUGCGGCG--CG- -5'
10417 3' -56.3 NC_002687.1 + 269552 0.66 0.98399
Target:  5'- uCGACCCgUGUUGCCGUAG-GCCGCu- -3'
miRNA:   3'- -GUUGGGgGUGAUGGCAUUgCGGCGcg -5'
10417 3' -56.3 NC_002687.1 + 140085 0.66 0.98399
Target:  5'- uGGCUCUCACgugcuUGCgGUcAACGuuGCGCg -3'
miRNA:   3'- gUUGGGGGUG-----AUGgCA-UUGCggCGCG- -5'
10417 3' -56.3 NC_002687.1 + 323876 0.66 0.98399
Target:  5'- gGACgCCUCACcuUGCCGaaagagaGAUGCCgGCGCg -3'
miRNA:   3'- gUUG-GGGGUG--AUGGCa------UUGCGG-CGCG- -5'
10417 3' -56.3 NC_002687.1 + 261684 0.66 0.98399
Target:  5'- gAGCCCuUCGCcaUGCCGUugcCGCCGCcCg -3'
miRNA:   3'- gUUGGG-GGUG--AUGGCAuu-GCGGCGcG- -5'
10417 3' -56.3 NC_002687.1 + 291357 0.66 0.982183
Target:  5'- -uGCCgCCCGC-GCCGguguGCGC-GCGCc -3'
miRNA:   3'- guUGG-GGGUGaUGGCau--UGCGgCGCG- -5'
10417 3' -56.3 NC_002687.1 + 200863 0.66 0.982183
Target:  5'- ---gCCCCGCaggauagAgCGUGGCGCCGC-Cg -3'
miRNA:   3'- guugGGGGUGa------UgGCAUUGCGGCGcG- -5'
10417 3' -56.3 NC_002687.1 + 205139 0.66 0.980227
Target:  5'- -cACUUCCGCgcACCGUcGCGCCGUa- -3'
miRNA:   3'- guUGGGGGUGa-UGGCAuUGCGGCGcg -5'
10417 3' -56.3 NC_002687.1 + 159279 0.66 0.980227
Target:  5'- ---gCCCUGCgUACggaaGUAACGCCGgGCu -3'
miRNA:   3'- guugGGGGUG-AUGg---CAUUGCGGCgCG- -5'
10417 3' -56.3 NC_002687.1 + 308314 0.66 0.980227
Target:  5'- --cCCCCaCGCUugCGUucGAC-CCGUGUg -3'
miRNA:   3'- guuGGGG-GUGAugGCA--UUGcGGCGCG- -5'
10417 3' -56.3 NC_002687.1 + 49345 0.66 0.980227
Target:  5'- --cUCCCCAC-ACCcucucACGcCCGCGCa -3'
miRNA:   3'- guuGGGGGUGaUGGcau--UGC-GGCGCG- -5'
10417 3' -56.3 NC_002687.1 + 299886 0.66 0.980227
Target:  5'- cCAGCUUCCugU-CCGUAGCGCuCGgaGUa -3'
miRNA:   3'- -GUUGGGGGugAuGGCAUUGCG-GCg-CG- -5'
10417 3' -56.3 NC_002687.1 + 249518 0.66 0.978115
Target:  5'- cCAAUCgCCGucgGCCuUGACGCgGCGCa -3'
miRNA:   3'- -GUUGGgGGUga-UGGcAUUGCGgCGCG- -5'
10417 3' -56.3 NC_002687.1 + 153877 0.66 0.978115
Target:  5'- -cACCCCCuucGCCGUAgcaaACGUCgGCGUc -3'
miRNA:   3'- guUGGGGGugaUGGCAU----UGCGG-CGCG- -5'
10417 3' -56.3 NC_002687.1 + 77773 0.66 0.97584
Target:  5'- -cACCCaCCGCUguuGCCGaaaacgaaAACGCCGUaGCa -3'
miRNA:   3'- guUGGG-GGUGA---UGGCa-------UUGCGGCG-CG- -5'
10417 3' -56.3 NC_002687.1 + 296058 0.66 0.97584
Target:  5'- uCAG-CCCCGCUGCUccgcuGCaCCGCGCu -3'
miRNA:   3'- -GUUgGGGGUGAUGGcau--UGcGGCGCG- -5'
10417 3' -56.3 NC_002687.1 + 238663 0.66 0.975604
Target:  5'- uGACuCCgCCAUgcggAUCGUucggugggccaccGACGCUGCGCg -3'
miRNA:   3'- gUUG-GG-GGUGa---UGGCA-------------UUGCGGCGCG- -5'
10417 3' -56.3 NC_002687.1 + 135630 0.67 0.970782
Target:  5'- -uGCUCUgGCgUACCGcGACGCgGUGCa -3'
miRNA:   3'- guUGGGGgUG-AUGGCaUUGCGgCGCG- -5'
10417 3' -56.3 NC_002687.1 + 77787 0.67 0.970782
Target:  5'- --uCCCCCACU-CCauc-CGCCGaCGCu -3'
miRNA:   3'- guuGGGGGUGAuGGcauuGCGGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.