miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10417 5' -56.3 NC_002687.1 + 223492 0.66 0.975241
Target:  5'- ----gCGGUGGCgGGGGC-GGGGGa-- -3'
miRNA:   3'- cauaaGCCACCG-CCUCGaCUCCCaca -5'
10417 5' -56.3 NC_002687.1 + 226500 0.66 0.970015
Target:  5'- cUGUUCGGUGGCGccGCUGGGacUGa -3'
miRNA:   3'- cAUAAGCCACCGCcuCGACUCccACa -5'
10417 5' -56.3 NC_002687.1 + 101481 0.68 0.932014
Target:  5'- -----aGGcGGUGGAGCUGAGacGGUGg -3'
miRNA:   3'- cauaagCCaCCGCCUCGACUC--CCACa -5'
10417 5' -56.3 NC_002687.1 + 304147 0.68 0.927047
Target:  5'- ----cCGGcgaccaaaaUGGUGGGGCUGuGGGUGc -3'
miRNA:   3'- cauaaGCC---------ACCGCCUCGACuCCCACa -5'
10417 5' -56.3 NC_002687.1 + 309797 0.69 0.903207
Target:  5'- ----gCGGUGGUgaagcaucagcucgGGAGgaGGGGGUGUu -3'
miRNA:   3'- cauaaGCCACCG--------------CCUCgaCUCCCACA- -5'
10417 5' -56.3 NC_002687.1 + 224999 0.69 0.87954
Target:  5'- ----gCGGUGGagcuGGAGCUGGagcGGGUGg -3'
miRNA:   3'- cauaaGCCACCg---CCUCGACU---CCCACa -5'
10417 5' -56.3 NC_002687.1 + 278948 0.7 0.865591
Target:  5'- ---aUCGGUGGUGGcAGCgcagGGGGGg-- -3'
miRNA:   3'- cauaAGCCACCGCC-UCGa---CUCCCaca -5'
10417 5' -56.3 NC_002687.1 + 225571 0.7 0.865591
Target:  5'- ---cUCGGgcagcuggGGcCGGAGCgGGGGGUGg -3'
miRNA:   3'- cauaAGCCa-------CC-GCCUCGaCUCCCACa -5'
10417 5' -56.3 NC_002687.1 + 311508 0.71 0.819318
Target:  5'- --uUUgGGUGGgGGGGgUGuAGGGUGUa -3'
miRNA:   3'- cauAAgCCACCgCCUCgAC-UCCCACA- -5'
10417 5' -56.3 NC_002687.1 + 226824 0.71 0.819318
Target:  5'- ----gCGGUGGCGGuGGCgGAGcGGUGa -3'
miRNA:   3'- cauaaGCCACCGCC-UCGaCUC-CCACa -5'
10417 5' -56.3 NC_002687.1 + 130769 0.72 0.785282
Target:  5'- gGUGUcCGGUuuGGuCGGAGgaGGGGGUGg -3'
miRNA:   3'- -CAUAaGCCA--CC-GCCUCgaCUCCCACa -5'
10417 5' -56.3 NC_002687.1 + 296181 1.06 0.008592
Target:  5'- uGUAUUCGGUGGCGGAGCUGAGGGUGUu -3'
miRNA:   3'- -CAUAAGCCACCGCCUCGACUCCCACA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.