miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10418 5' -54.4 NC_002687.1 + 38219 0.66 0.990817
Target:  5'- uCGCCCucc-GCAGCAGCuCGGAUaUAUCa -3'
miRNA:   3'- -GCGGGcuccCGUCGUCG-GUUUA-AUAG- -5'
10418 5' -54.4 NC_002687.1 + 82198 0.66 0.989591
Target:  5'- aGCUgGAuGGGCuucugAGCAGCCGGAauggggAUCg -3'
miRNA:   3'- gCGGgCU-CCCG-----UCGUCGGUUUaa----UAG- -5'
10418 5' -54.4 NC_002687.1 + 254299 0.66 0.988241
Target:  5'- aGCuuGAaaGGCGGaCAGCCGGGUUGg- -3'
miRNA:   3'- gCGggCUc-CCGUC-GUCGGUUUAAUag -5'
10418 5' -54.4 NC_002687.1 + 238520 0.66 0.988241
Target:  5'- uGUUCGAGGGCGGaaGGCCAugu--UCa -3'
miRNA:   3'- gCGGGCUCCCGUCg-UCGGUuuaauAG- -5'
10418 5' -54.4 NC_002687.1 + 298416 0.66 0.986758
Target:  5'- aCGCgCGc-GGCGGCGGCCGcggccUUAUCa -3'
miRNA:   3'- -GCGgGCucCCGUCGUCGGUuu---AAUAG- -5'
10418 5' -54.4 NC_002687.1 + 233282 0.67 0.981443
Target:  5'- aGCCCuaGAGaGGCAGauuaaAGCCAAGaagaUAUCu -3'
miRNA:   3'- gCGGG--CUC-CCGUCg----UCGGUUUa---AUAG- -5'
10418 5' -54.4 NC_002687.1 + 310869 0.67 0.981443
Target:  5'- gGUCCGGGGcGCGuGCGGCgGcGAUUAUUg -3'
miRNA:   3'- gCGGGCUCC-CGU-CGUCGgU-UUAAUAG- -5'
10418 5' -54.4 NC_002687.1 + 300455 0.68 0.972057
Target:  5'- aCGgUCG-GGGCAGUAGCgAAAguUUAUCc -3'
miRNA:   3'- -GCgGGCuCCCGUCGUCGgUUU--AAUAG- -5'
10418 5' -54.4 NC_002687.1 + 225059 0.68 0.969254
Target:  5'- uGCCgGcagcuGGGGCuGCAGCCGGAg---- -3'
miRNA:   3'- gCGGgC-----UCCCGuCGUCGGUUUaauag -5'
10418 5' -54.4 NC_002687.1 + 278128 0.68 0.963058
Target:  5'- uGCCCGAuuauccggguggGGGUGGUugguGCCcGAUUAUCc -3'
miRNA:   3'- gCGGGCU------------CCCGUCGu---CGGuUUAAUAG- -5'
10418 5' -54.4 NC_002687.1 + 204188 0.68 0.959654
Target:  5'- aGCgCGGGGGCGGU-GCCGAAc---- -3'
miRNA:   3'- gCGgGCUCCCGUCGuCGGUUUaauag -5'
10418 5' -54.4 NC_002687.1 + 234673 0.68 0.959654
Target:  5'- uCGCCUucucaaGGGcGGCGGCAGCCucg--AUCu -3'
miRNA:   3'- -GCGGG------CUC-CCGUCGUCGGuuuaaUAG- -5'
10418 5' -54.4 NC_002687.1 + 246986 0.68 0.956041
Target:  5'- gGUCUGaAGGGCAcGCAGCCAu------ -3'
miRNA:   3'- gCGGGC-UCCCGU-CGUCGGUuuaauag -5'
10418 5' -54.4 NC_002687.1 + 212386 0.69 0.952213
Target:  5'- aCGUggCGAGGGgGGCGGCCuuGUUcgCg -3'
miRNA:   3'- -GCGg-GCUCCCgUCGUCGGuuUAAuaG- -5'
10418 5' -54.4 NC_002687.1 + 103027 0.69 0.952213
Target:  5'- gGCCaCGAaGGCuGCAGCCAAGg---- -3'
miRNA:   3'- gCGG-GCUcCCGuCGUCGGUUUaauag -5'
10418 5' -54.4 NC_002687.1 + 197941 0.69 0.948168
Target:  5'- aGCgCCGAGGccgaAGCAGCCGAAggUGUg -3'
miRNA:   3'- gCG-GGCUCCcg--UCGUCGGUUUa-AUAg -5'
10418 5' -54.4 NC_002687.1 + 280962 0.69 0.939415
Target:  5'- gGCCUGGGuGGCGGCAGCg-------- -3'
miRNA:   3'- gCGGGCUC-CCGUCGUCGguuuaauag -5'
10418 5' -54.4 NC_002687.1 + 236349 0.7 0.913587
Target:  5'- aGCUCGAuGGUcugAGCGGCCGAAUUuuagGUCg -3'
miRNA:   3'- gCGGGCUcCCG---UCGUCGGUUUAA----UAG- -5'
10418 5' -54.4 NC_002687.1 + 295569 0.7 0.901679
Target:  5'- -cCCCGAGacGGUAGCGGCCAAGa---- -3'
miRNA:   3'- gcGGGCUC--CCGUCGUCGGUUUaauag -5'
10418 5' -54.4 NC_002687.1 + 298883 0.72 0.86077
Target:  5'- uGCCCucGGGC-GCGGCCAAGgaauUCa -3'
miRNA:   3'- gCGGGcuCCCGuCGUCGGUUUaau-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.