miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10419 3' -58.2 NC_002687.1 + 215261 0.68 0.888556
Target:  5'- gUGCagCGGGUCaAUCGgugGCUCCAUCUCu -3'
miRNA:   3'- gACG--GCCCAG-UGGCga-UGAGGUAGGG- -5'
10419 3' -58.2 NC_002687.1 + 72211 0.68 0.888556
Target:  5'- -cGCCaGGGUUACCGaCUGg-CCAggCCCg -3'
miRNA:   3'- gaCGG-CCCAGUGGC-GAUgaGGUa-GGG- -5'
10419 3' -58.2 NC_002687.1 + 145819 0.69 0.868677
Target:  5'- -cGCCGGGgCGCUGggucaGCUCC-UCCCa -3'
miRNA:   3'- gaCGGCCCaGUGGCga---UGAGGuAGGG- -5'
10419 3' -58.2 NC_002687.1 + 268537 0.69 0.861677
Target:  5'- gUGaCCGGGgcaGCgGCUGCUCCAUaaCa -3'
miRNA:   3'- gAC-GGCCCag-UGgCGAUGAGGUAggG- -5'
10419 3' -58.2 NC_002687.1 + 208887 0.69 0.853768
Target:  5'- gCUGCCuccaucGUCGCUGCUGCUUCcaucgucgcugcuGUCCCa -3'
miRNA:   3'- -GACGGcc----CAGUGGCGAUGAGG-------------UAGGG- -5'
10419 3' -58.2 NC_002687.1 + 307445 0.69 0.839617
Target:  5'- gCUGCCG--UCACCGCcgucACcgCCGUCCCc -3'
miRNA:   3'- -GACGGCccAGUGGCGa---UGa-GGUAGGG- -5'
10419 3' -58.2 NC_002687.1 + 226110 0.7 0.824083
Target:  5'- uCUGUagaGcGGUCGCUGUcACUaCCAUCCCc -3'
miRNA:   3'- -GACGg--C-CCAGUGGCGaUGA-GGUAGGG- -5'
10419 3' -58.2 NC_002687.1 + 226296 0.7 0.824083
Target:  5'- uCUGUagaGcGGUCGCUGUcACUaCCAUCCCc -3'
miRNA:   3'- -GACGg--C-CCAGUGGCGaUGA-GGUAGGG- -5'
10419 3' -58.2 NC_002687.1 + 1222 0.7 0.798828
Target:  5'- gUGCaCGGGacaCACCGCauaGCUCCAccgagacUCCCu -3'
miRNA:   3'- gACG-GCCCa--GUGGCGa--UGAGGU-------AGGG- -5'
10419 3' -58.2 NC_002687.1 + 695 0.7 0.798828
Target:  5'- gUGCaCGGGacaCACCGCauaGCUCCAccgagacUCCCu -3'
miRNA:   3'- gACG-GCCCa--GUGGCGa--UGAGGU-------AGGG- -5'
10419 3' -58.2 NC_002687.1 + 208726 0.7 0.782715
Target:  5'- gCUGCUGcuuccaucGUCGCUGCUGCUCCcaucGUCCUu -3'
miRNA:   3'- -GACGGCc-------CAGUGGCGAUGAGG----UAGGG- -5'
10419 3' -58.2 NC_002687.1 + 291384 0.71 0.774061
Target:  5'- gCUGCUGcGGUCGCUGCUugcccgggcGCUCUuUCUCu -3'
miRNA:   3'- -GACGGC-CCAGUGGCGA---------UGAGGuAGGG- -5'
10419 3' -58.2 NC_002687.1 + 315824 0.71 0.765297
Target:  5'- -cGCCGGGUgcCGCCGCcGCaCCcgaagAUCCCg -3'
miRNA:   3'- gaCGGCCCA--GUGGCGaUGaGG-----UAGGG- -5'
10419 3' -58.2 NC_002687.1 + 159744 0.71 0.72929
Target:  5'- uCUGUCGGcGUCGuCgGCUugUgCCAUCCUg -3'
miRNA:   3'- -GACGGCC-CAGU-GgCGAugA-GGUAGGG- -5'
10419 3' -58.2 NC_002687.1 + 136631 0.72 0.710819
Target:  5'- gUGUCGGGUCAacuuuccaUCGCUGCUCgAugucgucaaacuUCCCg -3'
miRNA:   3'- gACGGCCCAGU--------GGCGAUGAGgU------------AGGG- -5'
10419 3' -58.2 NC_002687.1 + 226668 0.72 0.682696
Target:  5'- uCUGCagaGcGGUCGCUGUcACUaCCAUCCCc -3'
miRNA:   3'- -GACGg--C-CCAGUGGCGaUGA-GGUAGGG- -5'
10419 3' -58.2 NC_002687.1 + 226482 0.72 0.682696
Target:  5'- uCUGCagaGcGGUCGCUGUcACUaCCAUCCCc -3'
miRNA:   3'- -GACGg--C-CCAGUGGCGaUGA-GGUAGGG- -5'
10419 3' -58.2 NC_002687.1 + 252267 0.73 0.625658
Target:  5'- -gGUCGGGUCGCCGgcccaUGCUUUAUCCg -3'
miRNA:   3'- gaCGGCCCAGUGGCg----AUGAGGUAGGg -5'
10419 3' -58.2 NC_002687.1 + 316348 0.76 0.477465
Target:  5'- aCUGCCGaGGaCACCGCUAUgCCGggCCCu -3'
miRNA:   3'- -GACGGC-CCaGUGGCGAUGaGGUa-GGG- -5'
10419 3' -58.2 NC_002687.1 + 300510 1.11 0.003277
Target:  5'- cCUGCCGGGUCACCGCUACUCCAUCCCu -3'
miRNA:   3'- -GACGGCCCAGUGGCGAUGAGGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.