miRNA display CGI


Results 21 - 40 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10419 5' -51.2 NC_002687.1 + 160951 0.67 0.999584
Target:  5'- cCCGGcGAGAGGUcucucguCGAaauuuuccuaaGGUUGGGGCu -3'
miRNA:   3'- -GGCU-UUCUCUAuu-----GCUg----------CCAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 316144 0.67 0.999584
Target:  5'- uCCGAc-GAGGUAACGgcauccggugagGCGGaugcagcucaUUGGGGCc -3'
miRNA:   3'- -GGCUuuCUCUAUUGC------------UGCC----------AGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 69041 0.67 0.999584
Target:  5'- gCGAu---GGUGGCGGCGGUggCGGuGGUg -3'
miRNA:   3'- gGCUuucuCUAUUGCUGCCA--GCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 55486 0.67 0.99949
Target:  5'- --uGGAGGGGUAugGA---UCGGGGCa -3'
miRNA:   3'- ggcUUUCUCUAUugCUgccAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 26445 0.67 0.999479
Target:  5'- aCGAAcggggauguAGAGuAUAuuugaauAUGACGGaggCGGGGCu -3'
miRNA:   3'- gGCUU---------UCUC-UAU-------UGCUGCCa--GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 3978 0.67 0.999377
Target:  5'- cCUGAAAGGGAggGACGGauggaGGgauugaccgGGGGCg -3'
miRNA:   3'- -GGCUUUCUCUa-UUGCUg----CCag-------CCCCG- -5'
10419 5' -51.2 NC_002687.1 + 97548 0.67 0.999377
Target:  5'- aCGAucGAGucgGACGGgGGUccaCGGGGa -3'
miRNA:   3'- gGCUuuCUCua-UUGCUgCCA---GCCCCg -5'
10419 5' -51.2 NC_002687.1 + 275333 0.67 0.999243
Target:  5'- gCCGAGAGGGGUcagcuGCGAgCGGUCGa--- -3'
miRNA:   3'- -GGCUUUCUCUAu----UGCU-GCCAGCcccg -5'
10419 5' -51.2 NC_002687.1 + 307015 0.68 0.998899
Target:  5'- aCCGGAgucccGGAGAUcgagAACGACGGUaacgugcaugaCGGGa- -3'
miRNA:   3'- -GGCUU-----UCUCUA----UUGCUGCCA-----------GCCCcg -5'
10419 5' -51.2 NC_002687.1 + 149789 0.68 0.998899
Target:  5'- gCGAuuGcAGAcuAUGACGGagGGGGUg -3'
miRNA:   3'- gGCUuuC-UCUauUGCUGCCagCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 226811 0.68 0.998899
Target:  5'- gCCGguGGcGGUGGCGGUGG-CGGuGGCg -3'
miRNA:   3'- -GGCuuUCuCUAUUGCUGCCaGCC-CCG- -5'
10419 5' -51.2 NC_002687.1 + 2962 0.68 0.998879
Target:  5'- uCCGA---GGAUAACGA-GGUucuugcuugaccaCGGGGCc -3'
miRNA:   3'- -GGCUuucUCUAUUGCUgCCA-------------GCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 122943 0.68 0.998774
Target:  5'- --aGAAGAGGUAcGCcggacuuucgugggaGACGGUCGaGGGCc -3'
miRNA:   3'- ggcUUUCUCUAU-UG---------------CUGCCAGC-CCCG- -5'
10419 5' -51.2 NC_002687.1 + 305172 0.68 0.998683
Target:  5'- -aGAAAGuuGUGGCGuCGGUU-GGGCg -3'
miRNA:   3'- ggCUUUCucUAUUGCuGCCAGcCCCG- -5'
10419 5' -51.2 NC_002687.1 + 85434 0.68 0.998431
Target:  5'- gUCGGGacAGAGGgugUGGCGGCGaUUGGGGUu -3'
miRNA:   3'- -GGCUU--UCUCU---AUUGCUGCcAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 296915 0.68 0.997805
Target:  5'- aCCGGAGGAGAcaacgcUGGCGACGuGcucgCGGaGaGCa -3'
miRNA:   3'- -GGCUUUCUCU------AUUGCUGC-Ca---GCC-C-CG- -5'
10419 5' -51.2 NC_002687.1 + 255652 0.68 0.997805
Target:  5'- gCCGggGGAaguccguguGGUGAUGACGGUgGuaGCg -3'
miRNA:   3'- -GGCuuUCU---------CUAUUGCUGCCAgCccCG- -5'
10419 5' -51.2 NC_002687.1 + 304538 0.69 0.997421
Target:  5'- uCCGAGucGGGGu---CGG-GGUCGGGGUc -3'
miRNA:   3'- -GGCUU--UCUCuauuGCUgCCAGCCCCG- -5'
10419 5' -51.2 NC_002687.1 + 226406 0.69 0.996982
Target:  5'- -gGggGGuGGUGugGGCGGcCGGGa- -3'
miRNA:   3'- ggCuuUCuCUAUugCUGCCaGCCCcg -5'
10419 5' -51.2 NC_002687.1 + 225848 0.69 0.996982
Target:  5'- -gGggGGuGGUGugGGCGGcCGGGa- -3'
miRNA:   3'- ggCuuUCuCUAUugCUGCCaGCCCcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.