Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1042 | 3' | -54.9 | NC_000924.1 | + | 43169 | 0.67 | 0.739342 |
Target: 5'- gGGAGuugaugGUAUCACUGCGGGGAuCGG-GAu -3' miRNA: 3'- -CCUC------UAUGGUGGCGUCUCUcGCCaCU- -5' |
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1042 | 3' | -54.9 | NC_000924.1 | + | 54992 | 0.67 | 0.686255 |
Target: 5'- cGGGGAUgACCAaCGCGGA-AGCGGcgGAa -3' miRNA: 3'- -CCUCUA-UGGUgGCGUCUcUCGCCa-CU- -5' |
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1042 | 3' | -54.9 | NC_000924.1 | + | 59894 | 0.68 | 0.675441 |
Target: 5'- aGGAGAUugCGCUuacgguugggaaGCuGAGAGUGGa-- -3' miRNA: 3'- -CCUCUAugGUGG------------CGuCUCUCGCCacu -5' |
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1042 | 3' | -54.9 | NC_000924.1 | + | 42363 | 0.68 | 0.661324 |
Target: 5'- cGGAGAUGCCgguaugaccagaaaACCGUGGcGuGCGGgGAa -3' miRNA: 3'- -CCUCUAUGG--------------UGGCGUCuCuCGCCaCU- -5' |
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1042 | 3' | -54.9 | NC_000924.1 | + | 14145 | 0.69 | 0.600271 |
Target: 5'- uGGGGAacagcagaagaccugACCGCCGCAGAGuGgauguuugacaUGGUGAa -3' miRNA: 3'- -CCUCUa--------------UGGUGGCGUCUCuC-----------GCCACU- -5' |
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1042 | 3' | -54.9 | NC_000924.1 | + | 25635 | 1.11 | 0.000936 |
Target: 5'- gGGAGAUACCACCGCAGAGAGCGGUGAa -3' miRNA: 3'- -CCUCUAUGGUGGCGUCUCUCGCCACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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