miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10420 3' -52.9 NC_002687.1 + 9885 0.65 0.998828
Target:  5'- gCCGGacuuGACGGAuGCGUggcgcauuggugCCGUguCGGACa -3'
miRNA:   3'- -GGUU----CUGUCU-CGCAa-----------GGCAguGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 159655 0.66 0.998648
Target:  5'- -uGAGACAGuuggcgagcccGGCGUuacuUCCGUaCGCaGGGCa -3'
miRNA:   3'- ggUUCUGUC-----------UCGCA----AGGCA-GUG-CCUG- -5'
10420 3' -52.9 NC_002687.1 + 100333 0.66 0.998093
Target:  5'- uCCGAGugGuugaGAGCGgcCCGaacacgaaCACGGGCa -3'
miRNA:   3'- -GGUUCugU----CUCGCaaGGCa-------GUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 203623 0.66 0.997751
Target:  5'- aCC-GGACuGAuCGUcaaagucgaCCGUCACGGACg -3'
miRNA:   3'- -GGuUCUGuCUcGCAa--------GGCAGUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 254351 0.66 0.997358
Target:  5'- -gAGGGCGGAcugcGCGUcggCCGUCAUGGu- -3'
miRNA:   3'- ggUUCUGUCU----CGCAa--GGCAGUGCCug -5'
10420 3' -52.9 NC_002687.1 + 145293 0.67 0.996911
Target:  5'- uCCAGGcuucGgAGAGCGUUgUGaacggCGCGGGCa -3'
miRNA:   3'- -GGUUC----UgUCUCGCAAgGCa----GUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 212313 0.67 0.995826
Target:  5'- cCCAGGGCuguGGAuGCGUcgUCCGUCaagauuACGGGu -3'
miRNA:   3'- -GGUUCUG---UCU-CGCA--AGGCAG------UGCCUg -5'
10420 3' -52.9 NC_002687.1 + 21795 0.67 0.995177
Target:  5'- cCCAAGgACAGGGCaUggCGUCGCcgGGGCu -3'
miRNA:   3'- -GGUUC-UGUCUCGcAagGCAGUG--CCUG- -5'
10420 3' -52.9 NC_002687.1 + 138213 0.68 0.99397
Target:  5'- aUCAAGAacGGGCGUUUCGUCAuaccgucguucaucuCGGAUc -3'
miRNA:   3'- -GGUUCUguCUCGCAAGGCAGU---------------GCCUG- -5'
10420 3' -52.9 NC_002687.1 + 123056 0.68 0.99397
Target:  5'- uCCGAGGCcauucacaugcucauGGA-CGUcgaCGUCACGGACg -3'
miRNA:   3'- -GGUUCUG---------------UCUcGCAag-GCAGUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 6377 0.68 0.993633
Target:  5'- gCGAGACAuGAGCcuugCUGUCAgCGGAUc -3'
miRNA:   3'- gGUUCUGU-CUCGcaa-GGCAGU-GCCUG- -5'
10420 3' -52.9 NC_002687.1 + 96900 0.68 0.991715
Target:  5'- aCGAGGCcGAuGCcUUCCGUguuccCGCGGACa -3'
miRNA:   3'- gGUUCUGuCU-CGcAAGGCA-----GUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 213290 0.68 0.989367
Target:  5'- cCCGugauGAUAaugcgcuugucGGGCucUCCGUCGCGGACg -3'
miRNA:   3'- -GGUu---CUGU-----------CUCGcaAGGCAGUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 57440 0.69 0.984909
Target:  5'- -uGAGAUgagAGGGUGgaugUCCGaCACGGGCg -3'
miRNA:   3'- ggUUCUG---UCUCGCa---AGGCaGUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 138899 0.69 0.984909
Target:  5'- aCAAGGCAcuGUGUcCCGUCcaucACGGGCa -3'
miRNA:   3'- gGUUCUGUcuCGCAaGGCAG----UGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 118421 0.7 0.974496
Target:  5'- uCCAcccGCaAGGGCGggaccugggUCCGUCAUGGACc -3'
miRNA:   3'- -GGUuc-UG-UCUCGCa--------AGGCAGUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 39400 0.7 0.974496
Target:  5'- ---cGACAuGAGCGUggCCuUCGCGGGCu -3'
miRNA:   3'- gguuCUGU-CUCGCAa-GGcAGUGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 80621 0.71 0.952296
Target:  5'- gCC-AGAguGgaaGGCGUgCCGUCACGGAa -3'
miRNA:   3'- -GGuUCUguC---UCGCAaGGCAGUGCCUg -5'
10420 3' -52.9 NC_002687.1 + 48474 0.72 0.944108
Target:  5'- -aAGGACuGGGCGUcCuCGUCcACGGACa -3'
miRNA:   3'- ggUUCUGuCUCGCAaG-GCAG-UGCCUG- -5'
10420 3' -52.9 NC_002687.1 + 18528 0.73 0.896433
Target:  5'- cCCAAgGACAGAGCuUUgCGUCGCugGGGCu -3'
miRNA:   3'- -GGUU-CUGUCUCGcAAgGCAGUG--CCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.