miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10420 5' -58.3 NC_002687.1 + 292829 0.66 0.956732
Target:  5'- uGGUUUuGGGCAcGaaaaaGCGGCCGCCUCGc -3'
miRNA:   3'- cCUAAGcUCUGU-Cg----UGCCGGCGGGGU- -5'
10420 5' -58.3 NC_002687.1 + 281758 0.66 0.953109
Target:  5'- cGGAg--GuGGCAGCGCaaGCCGCuCCCGu -3'
miRNA:   3'- -CCUaagCuCUGUCGUGc-CGGCG-GGGU- -5'
10420 5' -58.3 NC_002687.1 + 307649 0.66 0.952736
Target:  5'- gGGAccggUCGGGACAGCACcgucaaacacaggGGCaGCCUg- -3'
miRNA:   3'- -CCUa---AGCUCUGUCGUG-------------CCGgCGGGgu -5'
10420 5' -58.3 NC_002687.1 + 78843 0.66 0.949288
Target:  5'- cGGAUUUGc-GCAGCGCGGCCaCgUCGg -3'
miRNA:   3'- -CCUAAGCucUGUCGUGCCGGcGgGGU- -5'
10420 5' -58.3 NC_002687.1 + 58119 0.66 0.949288
Target:  5'- cGGAga-GAGACAGCGCaGUCGUagauguCCCu -3'
miRNA:   3'- -CCUaagCUCUGUCGUGcCGGCG------GGGu -5'
10420 5' -58.3 NC_002687.1 + 63696 0.66 0.945266
Target:  5'- aGGAcauaGAcGGCAGCACGGCU-CUCCAc -3'
miRNA:   3'- -CCUaag-CU-CUGUCGUGCCGGcGGGGU- -5'
10420 5' -58.3 NC_002687.1 + 159186 0.66 0.945266
Target:  5'- cGGGcuUUCGAccGGCGGCgACGGCgGUCCg- -3'
miRNA:   3'- -CCU--AAGCU--CUGUCG-UGCCGgCGGGgu -5'
10420 5' -58.3 NC_002687.1 + 39495 0.66 0.94104
Target:  5'- aGGGUgUCGAucucGACGGCACGGCagaguacuaCCCUAg -3'
miRNA:   3'- -CCUA-AGCU----CUGUCGUGCCGgc-------GGGGU- -5'
10420 5' -58.3 NC_002687.1 + 141090 0.66 0.938406
Target:  5'- uGGAUuguaacagcaaguccUUGGcGGcCAGCAUGGCCGCCUg- -3'
miRNA:   3'- -CCUA---------------AGCU-CU-GUCGUGCCGGCGGGgu -5'
10420 5' -58.3 NC_002687.1 + 298561 0.66 0.936608
Target:  5'- ---gUCGGGAUaaAG-ACGGCCGUCCUAc -3'
miRNA:   3'- ccuaAGCUCUG--UCgUGCCGGCGGGGU- -5'
10420 5' -58.3 NC_002687.1 + 41365 0.67 0.93197
Target:  5'- aGGGUugugcUCGAGA-AGCGCGaGCCGCaagCCGu -3'
miRNA:   3'- -CCUA-----AGCUCUgUCGUGC-CGGCGg--GGU- -5'
10420 5' -58.3 NC_002687.1 + 170971 0.67 0.930538
Target:  5'- ---gUCG-GACAGCACGGCUuggugugugagcagGUCCCc -3'
miRNA:   3'- ccuaAGCuCUGUCGUGCCGG--------------CGGGGu -5'
10420 5' -58.3 NC_002687.1 + 180962 0.67 0.927124
Target:  5'- ----aCGAGAaaaAGCACGaGCCGUCCg- -3'
miRNA:   3'- ccuaaGCUCUg--UCGUGC-CGGCGGGgu -5'
10420 5' -58.3 NC_002687.1 + 28372 0.67 0.927124
Target:  5'- aGAUaucCGAGACAGUAUGGaUCGUUCCGu -3'
miRNA:   3'- cCUAa--GCUCUGUCGUGCC-GGCGGGGU- -5'
10420 5' -58.3 NC_002687.1 + 118102 0.67 0.916809
Target:  5'- ----cUGAgGGCAGaCACGGUCGCCgCCAu -3'
miRNA:   3'- ccuaaGCU-CUGUC-GUGCCGGCGG-GGU- -5'
10420 5' -58.3 NC_002687.1 + 172184 0.67 0.916809
Target:  5'- ---aUCGAGAgGGCGCGcGCCGacgUCCAa -3'
miRNA:   3'- ccuaAGCUCUgUCGUGC-CGGCg--GGGU- -5'
10420 5' -58.3 NC_002687.1 + 268541 0.67 0.916809
Target:  5'- ----cCGGGGCAGC--GGCUGCUCCAu -3'
miRNA:   3'- ccuaaGCUCUGUCGugCCGGCGGGGU- -5'
10420 5' -58.3 NC_002687.1 + 166281 0.67 0.905667
Target:  5'- cGAga-GGGugAGCACGGCCGgCgCGc -3'
miRNA:   3'- cCUaagCUCugUCGUGCCGGCgGgGU- -5'
10420 5' -58.3 NC_002687.1 + 316058 0.68 0.893711
Target:  5'- aGGAUUCGGuGCGGCugGCGGUgGUgCCGa -3'
miRNA:   3'- -CCUAAGCUcUGUCG--UGCCGgCGgGGU- -5'
10420 5' -58.3 NC_002687.1 + 64577 0.68 0.887433
Target:  5'- uGGggUCGAGGCAagcuCugGGCuCGaCCCCu -3'
miRNA:   3'- -CCuaAGCUCUGUc---GugCCG-GC-GGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.