miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10421 3' -57.1 NC_002687.1 + 270844 0.66 0.962981
Target:  5'- --aAGAGUGCgcggCGCCCGUgguUUGUAauGGCg -3'
miRNA:   3'- gucUCUCACGa---GCGGGCG---AACGU--CUG- -5'
10421 3' -57.1 NC_002687.1 + 17279 0.66 0.959633
Target:  5'- aCAGuguGuGUGcCUUGUCUGUUUGCAGAa -3'
miRNA:   3'- -GUCu--CuCAC-GAGCGGGCGAACGUCUg -5'
10421 3' -57.1 NC_002687.1 + 267890 0.66 0.951156
Target:  5'- aGGAG-GUGCUUgGCCCGCUucaacuugggcuuaUccugGCGGACg -3'
miRNA:   3'- gUCUCuCACGAG-CGGGCGA--------------A----CGUCUG- -5'
10421 3' -57.1 NC_002687.1 + 270626 0.66 0.951156
Target:  5'- aGGAG-GUGCUUgGCCCGCUucaacuugggcuuaUccugGCGGACg -3'
miRNA:   3'- gUCUCuCACGAG-CGGGCGA--------------A----CGUCUG- -5'
10421 3' -57.1 NC_002687.1 + 96359 0.67 0.939779
Target:  5'- -cGAGGuUGCUCGCgUGCUUGguGcCg -3'
miRNA:   3'- guCUCUcACGAGCGgGCGAACguCuG- -5'
10421 3' -57.1 NC_002687.1 + 295247 0.67 0.91453
Target:  5'- -cGAGGGUGC--GCCuCGCggcGCAGGCg -3'
miRNA:   3'- guCUCUCACGagCGG-GCGaa-CGUCUG- -5'
10421 3' -57.1 NC_002687.1 + 249824 0.67 0.91453
Target:  5'- -cGAGAuugaUGCUUGCCaGgUUGCAGACg -3'
miRNA:   3'- guCUCUc---ACGAGCGGgCgAACGUCUG- -5'
10421 3' -57.1 NC_002687.1 + 199483 0.68 0.908826
Target:  5'- aGGAuuGAGUcGCUCGCCCuucuucaguGCUcUGCAGAg -3'
miRNA:   3'- gUCU--CUCA-CGAGCGGG---------CGA-ACGUCUg -5'
10421 3' -57.1 NC_002687.1 + 297453 0.68 0.890427
Target:  5'- uGGGGGGcGCuUCGCCCGUcaUGaCAGACu -3'
miRNA:   3'- gUCUCUCaCG-AGCGGGCGa-AC-GUCUG- -5'
10421 3' -57.1 NC_002687.1 + 25578 0.68 0.883874
Target:  5'- uGGGGAGUGgaCGCaauggaCGUUUGgAGACa -3'
miRNA:   3'- gUCUCUCACgaGCGg-----GCGAACgUCUG- -5'
10421 3' -57.1 NC_002687.1 + 141300 0.68 0.883874
Target:  5'- aAGAGGGUGCUUcacUCCGCcgUGCGGcACa -3'
miRNA:   3'- gUCUCUCACGAGc--GGGCGa-ACGUC-UG- -5'
10421 3' -57.1 NC_002687.1 + 301939 1.08 0.004838
Target:  5'- aCAGAGAGUGCUCGCCCGCUUGCAGACc -3'
miRNA:   3'- -GUCUCUCACGAGCGGGCGAACGUCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.