miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10421 5' -57.6 NC_002687.1 + 306352 0.66 0.964684
Target:  5'- cCGCCUGgGacgacccgucaacuuCGUCGAGGCgUACCUUg -3'
miRNA:   3'- aGCGGACaU---------------GCAGCUCCGaGUGGGAg -5'
10421 5' -57.6 NC_002687.1 + 329770 0.66 0.963433
Target:  5'- aUCGCUgcUGCGcCGAGGCgUGCCCg- -3'
miRNA:   3'- -AGCGGacAUGCaGCUCCGaGUGGGag -5'
10421 5' -57.6 NC_002687.1 + 121403 0.66 0.960173
Target:  5'- aCGaCCUGgaaACGUCGGGGCUgaaUACCa-- -3'
miRNA:   3'- aGC-GGACa--UGCAGCUCCGA---GUGGgag -5'
10421 5' -57.6 NC_002687.1 + 309415 0.66 0.949207
Target:  5'- uUCGCCgu--UGUCGGGGaaCACCCg- -3'
miRNA:   3'- -AGCGGacauGCAGCUCCgaGUGGGag -5'
10421 5' -57.6 NC_002687.1 + 277203 0.67 0.940877
Target:  5'- aUGCCUGUugGUCuuGGCgacuucgucgUCGCUCUg -3'
miRNA:   3'- aGCGGACAugCAGcuCCG----------AGUGGGAg -5'
10421 5' -57.6 NC_002687.1 + 234303 0.67 0.921702
Target:  5'- -aGCCUGUAUGUUuuuGcGCUUGCCUUCa -3'
miRNA:   3'- agCGGACAUGCAGcu-C-CGAGUGGGAG- -5'
10421 5' -57.6 NC_002687.1 + 7304 0.68 0.910849
Target:  5'- aUCGCgUGUGagcaGGGGUUCGgCCCUCa -3'
miRNA:   3'- -AGCGgACAUgcagCUCCGAGU-GGGAG- -5'
10421 5' -57.6 NC_002687.1 + 142544 0.68 0.910849
Target:  5'- -aGCCUGUcguCGUCGuccucguGGCcugCACCUUCg -3'
miRNA:   3'- agCGGACAu--GCAGCu------CCGa--GUGGGAG- -5'
10421 5' -57.6 NC_002687.1 + 213818 0.68 0.905108
Target:  5'- gUCGUacuCUGa--GUCGAGGCUCGCgCUUa -3'
miRNA:   3'- -AGCG---GACaugCAGCUCCGAGUGgGAG- -5'
10421 5' -57.6 NC_002687.1 + 243550 0.7 0.812929
Target:  5'- -gGCCguugagaaGUugGUUGAGGC-CGCCUUCa -3'
miRNA:   3'- agCGGa-------CAugCAGCUCCGaGUGGGAG- -5'
10421 5' -57.6 NC_002687.1 + 200904 0.7 0.804657
Target:  5'- cCGCCcGaGCGUCGAcgucGGCUCcaGCCUUCa -3'
miRNA:   3'- aGCGGaCaUGCAGCU----CCGAG--UGGGAG- -5'
10421 5' -57.6 NC_002687.1 + 111121 0.71 0.787705
Target:  5'- gUCGCCUGUGCGUgGc-GUUCAUCCg- -3'
miRNA:   3'- -AGCGGACAUGCAgCucCGAGUGGGag -5'
10421 5' -57.6 NC_002687.1 + 201386 0.71 0.786844
Target:  5'- uUUGCCUGUaccuguucaguguACGcCGcGGuCUCGCCCUCc -3'
miRNA:   3'- -AGCGGACA-------------UGCaGCuCC-GAGUGGGAG- -5'
10421 5' -57.6 NC_002687.1 + 294886 0.77 0.428147
Target:  5'- cCGCCUGcgcCG-CGAGGCgCACCCUCg -3'
miRNA:   3'- aGCGGACau-GCaGCUCCGaGUGGGAG- -5'
10421 5' -57.6 NC_002687.1 + 254790 0.78 0.379799
Target:  5'- -gGCCUGUgGCGUCGGGuaUCACCCUg -3'
miRNA:   3'- agCGGACA-UGCAGCUCcgAGUGGGAg -5'
10421 5' -57.6 NC_002687.1 + 301904 1.09 0.004654
Target:  5'- cUCGCCUGUACGUCGAGGCUCACCCUCu -3'
miRNA:   3'- -AGCGGACAUGCAGCUCCGAGUGGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.