Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10423 | 3' | -48.9 | NC_002687.1 | + | 255339 | 0.71 | 0.996746 |
Target: 5'- cCGAcacGAUGGCGCAGGccagagaaAAC-CGGGAACg -3' miRNA: 3'- -GCU---CUACCGUGUCU--------UUGaGCUCUUGg -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 45927 | 0.7 | 0.997648 |
Target: 5'- gCGGGAaguuuuucaaGGCACccauGGAGCUCGGGGACa -3' miRNA: 3'- -GCUCUa---------CCGUGu---CUUUGAGCUCUUGg -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 32228 | 0.7 | 0.998331 |
Target: 5'- gCGcGAUGGCACGGGAccACUCGAu---- -3' miRNA: 3'- -GCuCUACCGUGUCUU--UGAGCUcuugg -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 108576 | 0.69 | 0.999472 |
Target: 5'- uCGGGGuUGcGUACuuuGGuguACUCGAGGACCu -3' miRNA: 3'- -GCUCU-AC-CGUGu--CUu--UGAGCUCUUGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 212395 | 0.69 | 0.999001 |
Target: 5'- uGAGGUGGcCGCGGAugacaaaacuguGCUgGAGAAgCa -3' miRNA: 3'- gCUCUACC-GUGUCUu-----------UGAgCUCUUgG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 175837 | 0.69 | 0.999208 |
Target: 5'- cCGGGGUGGCAUGGGAacgaucauGCUCGAc-AUCg -3' miRNA: 3'- -GCUCUACCGUGUCUU--------UGAGCUcuUGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 249307 | 0.69 | 0.999351 |
Target: 5'- gCGaAGGUGGUggagucccagAUAGAGACagGGGGGCCg -3' miRNA: 3'- -GC-UCUACCG----------UGUCUUUGagCUCUUGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 217589 | 0.69 | 0.999572 |
Target: 5'- aCGGGGUGGCggGCGGcgauuGCUCGugggaauuuGAGCCc -3' miRNA: 3'- -GCUCUACCG--UGUCuu---UGAGCu--------CUUGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 235814 | 0.69 | 0.999472 |
Target: 5'- aGAGAUcgaGGUugAGAAGguggauCUCGAGGguACCg -3' miRNA: 3'- gCUCUA---CCGugUCUUU------GAGCUCU--UGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 111045 | 0.69 | 0.999572 |
Target: 5'- uCGAGcgGGCGCAcuGGucCUCGA-AACCa -3' miRNA: 3'- -GCUCuaCCGUGU--CUuuGAGCUcUUGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 199087 | 0.69 | 0.999038 |
Target: 5'- aCGAGAgGGCgACGGuu-UUCGGGAugCa -3' miRNA: 3'- -GCUCUaCCG-UGUCuuuGAGCUCUugG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 200114 | 0.69 | 0.999208 |
Target: 5'- aCGAGcgGGCACAGGcgGACggCGuuGACa -3' miRNA: 3'- -GCUCuaCCGUGUCU--UUGa-GCucUUGg -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 241253 | 0.68 | 0.999656 |
Target: 5'- uCGcAGAUGGCACcGuuguuUUCGgAGAGCCa -3' miRNA: 3'- -GC-UCUACCGUGuCuuu--GAGC-UCUUGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 174590 | 0.68 | 0.999656 |
Target: 5'- ----cUGGCGaAGGAACUUGAGAugCa -3' miRNA: 3'- gcucuACCGUgUCUUUGAGCUCUugG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 255876 | 0.68 | 0.999656 |
Target: 5'- uGAGGUGGCACuGAcaGACauuUCGgcAGAGCa -3' miRNA: 3'- gCUCUACCGUGuCU--UUG---AGC--UCUUGg -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 97381 | 0.68 | 0.999781 |
Target: 5'- gCGAGAucaUGGUGCGuccGAAcaaguCUUGAGGACCu -3' miRNA: 3'- -GCUCU---ACCGUGU---CUUu----GAGCUCUUGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 293473 | 0.68 | 0.999781 |
Target: 5'- -aAGGUGGUAuCAGcgGAGCUCGAGuuacACCc -3' miRNA: 3'- gcUCUACCGU-GUC--UUUGAGCUCu---UGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 97052 | 0.68 | 0.999781 |
Target: 5'- gGAGAUGuCGCAGAacGugUCGgcgcuacgcaAGGACCg -3' miRNA: 3'- gCUCUACcGUGUCU--UugAGC----------UCUUGG- -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 194491 | 0.68 | 0.999656 |
Target: 5'- aCGAGcgGGCGCAGGcgGACggCGuuGACa -3' miRNA: 3'- -GCUCuaCCGUGUCU--UUGa-GCucUUGg -5' |
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10423 | 3' | -48.9 | NC_002687.1 | + | 182241 | 0.68 | 0.999827 |
Target: 5'- --cGAcGGCACGGAGAUggggUCGAGGGgCg -3' miRNA: 3'- gcuCUaCCGUGUCUUUG----AGCUCUUgG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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