miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10423 3' -48.9 NC_002687.1 + 74427 0.66 0.999973
Target:  5'- cCGAGAgccaGGCACAGGAcC-CGAuGAUCa -3'
miRNA:   3'- -GCUCUa---CCGUGUCUUuGaGCUcUUGG- -5'
10423 3' -48.9 NC_002687.1 + 223878 0.66 0.999973
Target:  5'- uCGGGGUGGCuuucgcGCAaauGAAGCUUGguGGGAUCg -3'
miRNA:   3'- -GCUCUACCG------UGU---CUUUGAGC--UCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 231596 0.67 0.999964
Target:  5'- uCGuAGGUGGCAgCGGcuacucCUCGGuGAACCg -3'
miRNA:   3'- -GC-UCUACCGU-GUCuuu---GAGCU-CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 272035 0.67 0.999964
Target:  5'- uCGuuAUGGCG-GGAuuCUCGGGAGCg -3'
miRNA:   3'- -GCucUACCGUgUCUuuGAGCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 248681 0.67 0.999952
Target:  5'- -aGGAUGaCAUAGAGagcguGCUCGAGAcguacACCg -3'
miRNA:   3'- gcUCUACcGUGUCUU-----UGAGCUCU-----UGG- -5'
10423 3' -48.9 NC_002687.1 + 133729 0.67 0.999952
Target:  5'- gGGGAUGGUGguGcGAUUgGAGGACa -3'
miRNA:   3'- gCUCUACCGUguCuUUGAgCUCUUGg -5'
10423 3' -48.9 NC_002687.1 + 58264 0.67 0.999937
Target:  5'- --cGGUGGUACGcAAACUCuGAaGAACCu -3'
miRNA:   3'- gcuCUACCGUGUcUUUGAG-CU-CUUGG- -5'
10423 3' -48.9 NC_002687.1 + 140689 0.67 0.999918
Target:  5'- aGAGGUGGCucACAGAGuCaaGGGAcaggcGCCa -3'
miRNA:   3'- gCUCUACCG--UGUCUUuGagCUCU-----UGG- -5'
10423 3' -48.9 NC_002687.1 + 319584 0.67 0.999918
Target:  5'- gCGAGAgaagcacGGcCugGGAGAUgaaGGGAACCg -3'
miRNA:   3'- -GCUCUa------CC-GugUCUUUGag-CUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 238458 0.67 0.999894
Target:  5'- aCGuucuUGGCAUGGAAggaguucagguGCUgGAGAACCc -3'
miRNA:   3'- -GCucu-ACCGUGUCUU-----------UGAgCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 283195 0.67 0.999894
Target:  5'- aGGGgcGGCAgcacCAGgcGCggCGGGGGCCg -3'
miRNA:   3'- gCUCuaCCGU----GUCuuUGa-GCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 62154 0.68 0.999864
Target:  5'- aGAGGUGaaGCAGcuGAACUCGGGuAUCa -3'
miRNA:   3'- gCUCUACcgUGUC--UUUGAGCUCuUGG- -5'
10423 3' -48.9 NC_002687.1 + 182241 0.68 0.999827
Target:  5'- --cGAcGGCACGGAGAUggggUCGAGGGgCg -3'
miRNA:   3'- gcuCUaCCGUGUCUUUG----AGCUCUUgG- -5'
10423 3' -48.9 NC_002687.1 + 158200 0.68 0.9998
Target:  5'- -cGGGUGacacaucccucuucCGCAGAuACUCGAGGGCCu -3'
miRNA:   3'- gcUCUACc-------------GUGUCUuUGAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 293473 0.68 0.999781
Target:  5'- -aAGGUGGUAuCAGcgGAGCUCGAGuuacACCc -3'
miRNA:   3'- gcUCUACCGU-GUC--UUUGAGCUCu---UGG- -5'
10423 3' -48.9 NC_002687.1 + 56813 0.68 0.999781
Target:  5'- cCGAG--GGCACGGAAACacaguaugcCGuGGACCg -3'
miRNA:   3'- -GCUCuaCCGUGUCUUUGa--------GCuCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 97381 0.68 0.999781
Target:  5'- gCGAGAucaUGGUGCGuccGAAcaaguCUUGAGGACCu -3'
miRNA:   3'- -GCUCU---ACCGUGU---CUUu----GAGCUCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 97052 0.68 0.999781
Target:  5'- gGAGAUGuCGCAGAacGugUCGgcgcuacgcaAGGACCg -3'
miRNA:   3'- gCUCUACcGUGUCU--UugAGC----------UCUUGG- -5'
10423 3' -48.9 NC_002687.1 + 255876 0.68 0.999656
Target:  5'- uGAGGUGGCACuGAcaGACauuUCGgcAGAGCa -3'
miRNA:   3'- gCUCUACCGUGuCU--UUG---AGC--UCUUGg -5'
10423 3' -48.9 NC_002687.1 + 241253 0.68 0.999656
Target:  5'- uCGcAGAUGGCACcGuuguuUUCGgAGAGCCa -3'
miRNA:   3'- -GC-UCUACCGUGuCuuu--GAGC-UCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.