Results 1 - 20 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 308737 | 1.1 | 0.003598 |
Target: 5'- uCAACCCAGUACCCGGGCAGGGCAAGGa -3' miRNA: 3'- -GUUGGGUCAUGGGCCCGUCCCGUUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 308420 | 0.76 | 0.478901 |
Target: 5'- -cACCCGGcgACCCcGGCGGGGCGGGc -3' miRNA: 3'- guUGGGUCa-UGGGcCCGUCCCGUUCc -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 285127 | 0.73 | 0.618083 |
Target: 5'- aAACaCCAuGUACCUGGGCAuuGGGCAAa- -3' miRNA: 3'- gUUG-GGU-CAUGGGCCCGU--CCCGUUcc -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 201870 | 0.73 | 0.62764 |
Target: 5'- uGGCUCAcgcGcGCUCGGGCGGGGCAGGcGg -3' miRNA: 3'- gUUGGGU---CaUGGGCCCGUCCCGUUC-C- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 200956 | 0.73 | 0.62764 |
Target: 5'- uGGCUCAugcGcGCUCGGGCGGGGCAGGcGg -3' miRNA: 3'- gUUGGGU---CaUGGGCCCGUCCCGUUC-C- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 113975 | 0.72 | 0.646757 |
Target: 5'- gGACgC-GUGCCCGGGCccaGGCAAGGc -3' miRNA: 3'- gUUGgGuCAUGGGCCCGuc-CCGUUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 35838 | 0.72 | 0.684815 |
Target: 5'- uCAACCaCAcUGCCCacGGguGGGCGAGGc -3' miRNA: 3'- -GUUGG-GUcAUGGGc-CCguCCCGUUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 273893 | 0.71 | 0.749666 |
Target: 5'- uCAACUCAaugcugacagauGUugCCaGGGCuguGGGCAAGGu -3' miRNA: 3'- -GUUGGGU------------CAugGG-CCCGu--CCCGUUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 226802 | 0.7 | 0.75863 |
Target: 5'- gGugCCGGUGCCgGuGGCGGuGGCGGuGGc -3' miRNA: 3'- gUugGGUCAUGGgC-CCGUC-CCGUU-CC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 308329 | 0.7 | 0.75863 |
Target: 5'- uCGACCCGuGUGuCUCucGCGGGGCAAGGu -3' miRNA: 3'- -GUUGGGU-CAU-GGGccCGUCCCGUUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 268121 | 0.69 | 0.834036 |
Target: 5'- aCGAUaCAGgcUUCGGGCGGGGCugcGGGg -3' miRNA: 3'- -GUUGgGUCauGGGCCCGUCCCGu--UCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 270398 | 0.69 | 0.834036 |
Target: 5'- aCGAUaCAGgcUUCGGGCGGGGCugcgGAGGg -3' miRNA: 3'- -GUUGgGUCauGGGCCCGUCCCG----UUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 18675 | 0.69 | 0.8492 |
Target: 5'- -cGCCC---GCCCccgaagcagGGGCAGGaGCAGGGg -3' miRNA: 3'- guUGGGucaUGGG---------CCCGUCC-CGUUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 129456 | 0.69 | 0.8492 |
Target: 5'- gAACCauuucaAG-ACCUGGcuuaagcgcacGCAGGGCAAGGa -3' miRNA: 3'- gUUGGg-----UCaUGGGCC-----------CGUCCCGUUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 85415 | 0.68 | 0.856528 |
Target: 5'- gGGCgCCGGUGCUCaGGGCccucAGGGUccuAAGGg -3' miRNA: 3'- gUUG-GGUCAUGGG-CCCG----UCCCG---UUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 278099 | 0.68 | 0.890413 |
Target: 5'- -uGCCCGauUAUCCGGGUGGGGguGGa -3' miRNA: 3'- guUGGGUc-AUGGGCCCGUCCCguUCc -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 238728 | 0.67 | 0.902606 |
Target: 5'- aCGACCU-GUACaCGGGUucGGGCAAGa -3' miRNA: 3'- -GUUGGGuCAUGgGCCCGu-CCCGUUCc -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 107650 | 0.67 | 0.902606 |
Target: 5'- cCAAUCCAaacgGUACCC-GGCGGaaacguuuucGGCGAGGu -3' miRNA: 3'- -GUUGGGU----CAUGGGcCCGUC----------CCGUUCC- -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 278128 | 0.67 | 0.919367 |
Target: 5'- -uGCCCGauUAUCCGGGUGGGGguGGu -3' miRNA: 3'- guUGGGUc-AUGGGCCCGUCCCguUCc -5' |
|||||||
10425 | 3' | -58.5 | NC_002687.1 | + | 224569 | 0.67 | 0.919367 |
Target: 5'- aCAACCCAGcucCUCGaGCAGGcGCAGGc -3' miRNA: 3'- -GUUGGGUCau-GGGCcCGUCC-CGUUCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home