Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10425 | 5' | -57.3 | NC_002687.1 | + | 246778 | 0.66 | 0.964494 |
Target: 5'- gGACUUccaagaugUGCCCCGgGGGGuGugGCGgGGa -3' miRNA: 3'- -UUGGA--------ACGGGGCgCUCU-CugUGUgCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 89661 | 0.66 | 0.961289 |
Target: 5'- cACC-UGCuCCCGCGAcaacgGAGGC-CGCGa -3' miRNA: 3'- uUGGaACG-GGGCGCU-----CUCUGuGUGCc -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 262188 | 0.68 | 0.906864 |
Target: 5'- gAACUggGCgaUGCGAGAGAaGCACGGg -3' miRNA: 3'- -UUGGaaCGggGCGCUCUCUgUGUGCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 96486 | 0.68 | 0.900962 |
Target: 5'- -----aGCCCCGCGAGcGACGCG-GGc -3' miRNA: 3'- uuggaaCGGGGCGCUCuCUGUGUgCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 142949 | 0.69 | 0.875317 |
Target: 5'- uGCCac-CCCCGUGuGAGACGCAaaaGGg -3' miRNA: 3'- uUGGaacGGGGCGCuCUCUGUGUg--CC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 308694 | 1.09 | 0.005393 |
Target: 5'- aAACCUUGCCCCGCGAGAGACACACGGg -3' miRNA: 3'- -UUGGAACGGGGCGCUCUCUGUGUGCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 202234 | 0.69 | 0.882027 |
Target: 5'- cGCC-UGCCCCGCccGAG-CGCGCGu -3' miRNA: 3'- uUGGaACGGGGCGcuCUCuGUGUGCc -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 25575 | 0.69 | 0.882027 |
Target: 5'- uGACCUUGCCgCagaaccaGCGGcuuggcacaaccGAGACACGCGa -3' miRNA: 3'- -UUGGAACGG-Gg------CGCU------------CUCUGUGUGCc -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 201320 | 0.68 | 0.900962 |
Target: 5'- cGCC-UGCCCCGCccGAGcGCGCAUGa -3' miRNA: 3'- uUGGaACGGGGCGcuCUC-UGUGUGCc -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 317024 | 0.68 | 0.900962 |
Target: 5'- cGACCauccguggUGUCUCGCGAGAGGCuCcCGGu -3' miRNA: 3'- -UUGGa-------ACGGGGCGCUCUCUGuGuGCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 238644 | 0.67 | 0.932741 |
Target: 5'- gAGCCagggUGCCCUuucugauGCGAGAGcaagUGCACGGa -3' miRNA: 3'- -UUGGa---ACGGGG-------CGCUCUCu---GUGUGCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 96974 | 0.67 | 0.933216 |
Target: 5'- aAGCCUUGCaCUC----GAGACACGCGGa -3' miRNA: 3'- -UUGGAACG-GGGcgcuCUCUGUGUGCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 98645 | 0.67 | 0.939644 |
Target: 5'- cACCUUGCa--GCGAGAGuggcuaucaagcgacGCACACGa -3' miRNA: 3'- uUGGAACGgggCGCUCUC---------------UGUGUGCc -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 308781 | 0.66 | 0.954292 |
Target: 5'- cGCCc-GCCCCGCcGGGGuCGC-CGGg -3' miRNA: 3'- uUGGaaCGGGGCGcUCUCuGUGuGCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 91488 | 0.66 | 0.961289 |
Target: 5'- -cCCUUGCCCUGUGcGAuaauggucGACGCuuCGGa -3' miRNA: 3'- uuGGAACGGGGCGCuCU--------CUGUGu-GCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 319137 | 0.66 | 0.964494 |
Target: 5'- gGACUUccaagaugUGCCCCGgGGGGuGugGCGgGGa -3' miRNA: 3'- -UUGGA--------ACGGGGCgCUCU-CugUGUgCC- -5' |
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10425 | 5' | -57.3 | NC_002687.1 | + | 308397 | 0.66 | 0.967215 |
Target: 5'- -uCCgagGCCCCGgGGGAugcugcaccaguuGACGgGCGGu -3' miRNA: 3'- uuGGaa-CGGGGCgCUCU-------------CUGUgUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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