miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10426 3' -52.7 NC_002687.1 + 101840 0.66 0.998289
Target:  5'- gAUC-CCGAUGucaggcaauacauGUUCGAGCGUuugcuCACa -3'
miRNA:   3'- gUAGaGGCUACu------------CGAGCUCGCAu----GUG- -5'
10426 3' -52.7 NC_002687.1 + 35572 0.66 0.997525
Target:  5'- uGUCUUucgcgcacacgcgcgUGAUuauuucGAGCUCG-GCGUACACg -3'
miRNA:   3'- gUAGAG---------------GCUA------CUCGAGCuCGCAUGUG- -5'
10426 3' -52.7 NC_002687.1 + 69591 0.66 0.997359
Target:  5'- aAUCUCCGcaaucGC-CGaAGCGUACGCg -3'
miRNA:   3'- gUAGAGGCuacu-CGaGC-UCGCAUGUG- -5'
10426 3' -52.7 NC_002687.1 + 299777 0.66 0.996904
Target:  5'- aCGUCUCCGGgccccGAacaCUCGGGC-UACACu -3'
miRNA:   3'- -GUAGAGGCUa----CUc--GAGCUCGcAUGUG- -5'
10426 3' -52.7 NC_002687.1 + 300254 0.67 0.9958
Target:  5'- --cUUCCGccacuUGGGCUCGGGUGgcUACg -3'
miRNA:   3'- guaGAGGCu----ACUCGAGCUCGCauGUG- -5'
10426 3' -52.7 NC_002687.1 + 202050 0.67 0.995138
Target:  5'- --aCUUCGcgGAGUUCGAGCuGUAUg- -3'
miRNA:   3'- guaGAGGCuaCUCGAGCUCG-CAUGug -5'
10426 3' -52.7 NC_002687.1 + 211999 0.68 0.991593
Target:  5'- gGUgUCCGAgauUGGGCUUGcGGUGUACGa -3'
miRNA:   3'- gUAgAGGCU---ACUCGAGC-UCGCAUGUg -5'
10426 3' -52.7 NC_002687.1 + 234571 0.68 0.991261
Target:  5'- -uUCUCUGGUcGAGCUCGcguugcuuccgaucAGCGgcCACu -3'
miRNA:   3'- guAGAGGCUA-CUCGAGC--------------UCGCauGUG- -5'
10426 3' -52.7 NC_002687.1 + 315460 0.68 0.987787
Target:  5'- aCAUCgUCCGAgGAGCUUGAGC-UugAa -3'
miRNA:   3'- -GUAG-AGGCUaCUCGAGCUCGcAugUg -5'
10426 3' -52.7 NC_002687.1 + 171803 0.69 0.98079
Target:  5'- --aCUCCauucuuGGUGAGCUUGAGUGUAUcguaGCa -3'
miRNA:   3'- guaGAGG------CUACUCGAGCUCGCAUG----UG- -5'
10426 3' -52.7 NC_002687.1 + 129011 0.7 0.965222
Target:  5'- uCAUCgaUCCGuugcuucuUGAGCUCGAGgCGgACACu -3'
miRNA:   3'- -GUAG--AGGCu-------ACUCGAGCUC-GCaUGUG- -5'
10426 3' -52.7 NC_002687.1 + 146676 0.71 0.954784
Target:  5'- uGUCaCCGuacuUGAGUUCGAGC-UGCACg -3'
miRNA:   3'- gUAGaGGCu---ACUCGAGCUCGcAUGUG- -5'
10426 3' -52.7 NC_002687.1 + 161851 0.71 0.950878
Target:  5'- cCAUCUCgccuuCGGacacGAGCUCGAGCGUGgucCGCg -3'
miRNA:   3'- -GUAGAG-----GCUa---CUCGAGCUCGCAU---GUG- -5'
10426 3' -52.7 NC_002687.1 + 202488 0.71 0.942406
Target:  5'- --aCUUCGcgGAGUUCGAGCuGUACGa -3'
miRNA:   3'- guaGAGGCuaCUCGAGCUCG-CAUGUg -5'
10426 3' -52.7 NC_002687.1 + 140213 0.72 0.922763
Target:  5'- aGUCUCUGA--AGCUguaGAGUGUGCACa -3'
miRNA:   3'- gUAGAGGCUacUCGAg--CUCGCAUGUG- -5'
10426 3' -52.7 NC_002687.1 + 231562 0.74 0.842673
Target:  5'- -uUgUCCGAUGAGCUUuucgaGAGCGUGCu- -3'
miRNA:   3'- guAgAGGCUACUCGAG-----CUCGCAUGug -5'
10426 3' -52.7 NC_002687.1 + 309745 1.1 0.011223
Target:  5'- aCAUCUCCGAUGAGCUCGAGCGUACACu -3'
miRNA:   3'- -GUAGAGGCUACUCGAGCUCGCAUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.