Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10426 | 3' | -52.7 | NC_002687.1 | + | 101840 | 0.66 | 0.998289 |
Target: 5'- gAUC-CCGAUGucaggcaauacauGUUCGAGCGUuugcuCACa -3' miRNA: 3'- gUAGaGGCUACu------------CGAGCUCGCAu----GUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 309745 | 1.1 | 0.011223 |
Target: 5'- aCAUCUCCGAUGAGCUCGAGCGUACACu -3' miRNA: 3'- -GUAGAGGCUACUCGAGCUCGCAUGUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 161851 | 0.71 | 0.950878 |
Target: 5'- cCAUCUCgccuuCGGacacGAGCUCGAGCGUGgucCGCg -3' miRNA: 3'- -GUAGAG-----GCUa---CUCGAGCUCGCAU---GUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 146676 | 0.71 | 0.954784 |
Target: 5'- uGUCaCCGuacuUGAGUUCGAGC-UGCACg -3' miRNA: 3'- gUAGaGGCu---ACUCGAGCUCGcAUGUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 171803 | 0.69 | 0.98079 |
Target: 5'- --aCUCCauucuuGGUGAGCUUGAGUGUAUcguaGCa -3' miRNA: 3'- guaGAGG------CUACUCGAGCUCGCAUG----UG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 234571 | 0.68 | 0.991261 |
Target: 5'- -uUCUCUGGUcGAGCUCGcguugcuuccgaucAGCGgcCACu -3' miRNA: 3'- guAGAGGCUA-CUCGAGC--------------UCGCauGUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 211999 | 0.68 | 0.991593 |
Target: 5'- gGUgUCCGAgauUGGGCUUGcGGUGUACGa -3' miRNA: 3'- gUAgAGGCU---ACUCGAGC-UCGCAUGUg -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 299777 | 0.66 | 0.996904 |
Target: 5'- aCGUCUCCGGgccccGAacaCUCGGGC-UACACu -3' miRNA: 3'- -GUAGAGGCUa----CUc--GAGCUCGcAUGUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 35572 | 0.66 | 0.997525 |
Target: 5'- uGUCUUucgcgcacacgcgcgUGAUuauuucGAGCUCG-GCGUACACg -3' miRNA: 3'- gUAGAG---------------GCUA------CUCGAGCuCGCAUGUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 300254 | 0.67 | 0.9958 |
Target: 5'- --cUUCCGccacuUGGGCUCGGGUGgcUACg -3' miRNA: 3'- guaGAGGCu----ACUCGAGCUCGCauGUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 202050 | 0.67 | 0.995138 |
Target: 5'- --aCUUCGcgGAGUUCGAGCuGUAUg- -3' miRNA: 3'- guaGAGGCuaCUCGAGCUCG-CAUGug -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 315460 | 0.68 | 0.987787 |
Target: 5'- aCAUCgUCCGAgGAGCUUGAGC-UugAa -3' miRNA: 3'- -GUAG-AGGCUaCUCGAGCUCGcAugUg -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 129011 | 0.7 | 0.965222 |
Target: 5'- uCAUCgaUCCGuugcuucuUGAGCUCGAGgCGgACACu -3' miRNA: 3'- -GUAG--AGGCu-------ACUCGAGCUC-GCaUGUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 202488 | 0.71 | 0.942406 |
Target: 5'- --aCUUCGcgGAGUUCGAGCuGUACGa -3' miRNA: 3'- guaGAGGCuaCUCGAGCUCG-CAUGUg -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 140213 | 0.72 | 0.922763 |
Target: 5'- aGUCUCUGA--AGCUguaGAGUGUGCACa -3' miRNA: 3'- gUAGAGGCUacUCGAg--CUCGCAUGUG- -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 231562 | 0.74 | 0.842673 |
Target: 5'- -uUgUCCGAUGAGCUUuucgaGAGCGUGCu- -3' miRNA: 3'- guAgAGGCUACUCGAG-----CUCGCAUGug -5' |
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10426 | 3' | -52.7 | NC_002687.1 | + | 69591 | 0.66 | 0.997359 |
Target: 5'- aAUCUCCGcaaucGC-CGaAGCGUACGCg -3' miRNA: 3'- gUAGAGGCuacu-CGaGC-UCGCAUGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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