miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1043 3' -56.9 NC_000924.1 + 51216 0.66 0.68381
Target:  5'- cUGCCGUcgGCGcGuuGCCACgGGCAa- -3'
miRNA:   3'- cAUGGCA--CGCaCuuCGGUGgCCGUgg -5'
1043 3' -56.9 NC_000924.1 + 51687 0.66 0.662369
Target:  5'- cUACCGUGCGcggaggUGAAGUCAggGGCAa- -3'
miRNA:   3'- cAUGGCACGC------ACUUCGGUggCCGUgg -5'
1043 3' -56.9 NC_000924.1 + 38491 0.66 0.630028
Target:  5'- cGUGCCGgagaGUcUGAaaaAGCCGCCGGaGCUg -3'
miRNA:   3'- -CAUGGCa---CGcACU---UCGGUGGCCgUGG- -5'
1043 3' -56.9 NC_000924.1 + 56214 0.66 0.630028
Target:  5'- cUGCUG-GCGUGAcaa-ACCGGCAUCa -3'
miRNA:   3'- cAUGGCaCGCACUucggUGGCCGUGG- -5'
1043 3' -56.9 NC_000924.1 + 54231 0.66 0.62679
Target:  5'- aUACUGUGCG-GAAgGCCACCaauGGUgugaaacaugugguGCCg -3'
miRNA:   3'- cAUGGCACGCaCUU-CGGUGG---CCG--------------UGG- -5'
1043 3' -56.9 NC_000924.1 + 12540 0.67 0.60846
Target:  5'- aGUGCCGUGC-UGAAGCCAaacaaCAUCa -3'
miRNA:   3'- -CAUGGCACGcACUUCGGUggcc-GUGG- -5'
1043 3' -56.9 NC_000924.1 + 30046 0.69 0.472897
Target:  5'- -aGCCGUGaccaaacagGAuauAGCCACCgcuGGCACCg -3'
miRNA:   3'- caUGGCACgca------CU---UCGGUGG---CCGUGG- -5'
1043 3' -56.9 NC_000924.1 + 53409 0.69 0.453308
Target:  5'- -aACCGUaguGCG-GAAGCCAaaGGCAgCCc -3'
miRNA:   3'- caUGGCA---CGCaCUUCGGUggCCGU-GG- -5'
1043 3' -56.9 NC_000924.1 + 17029 0.7 0.415506
Target:  5'- -gGCCGUGgGUGGaaaaAGCCGCUGaGCAgUg -3'
miRNA:   3'- caUGGCACgCACU----UCGGUGGC-CGUgG- -5'
1043 3' -56.9 NC_000924.1 + 51477 0.72 0.307009
Target:  5'- -cACCGguaCGUGAagGGCUACCGGCuCCu -3'
miRNA:   3'- caUGGCac-GCACU--UCGGUGGCCGuGG- -5'
1043 3' -56.9 NC_000924.1 + 50236 0.75 0.199665
Target:  5'- aUGCCGUguuuuccugauaGCGUGAauAGCCGCCcuGCGCCg -3'
miRNA:   3'- cAUGGCA------------CGCACU--UCGGUGGc-CGUGG- -5'
1043 3' -56.9 NC_000924.1 + 27850 1.11 0.000594
Target:  5'- gGUACCGUGCGUGAAGCCACCGGCACCu -3'
miRNA:   3'- -CAUGGCACGCACUUCGGUGGCCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.