miRNA display CGI


Results 1 - 11 of 11 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1043 5' -57.8 NC_000924.1 + 51485 0.66 0.586379
Target:  5'- cGUGAaggGCuACCGGCUCCUGACauUGcGCGu -3'
miRNA:   3'- -UAUUa--CGuUGGCCGGGGGCUG--AC-CGU- -5'
1043 5' -57.8 NC_000924.1 + 45304 0.66 0.575558
Target:  5'- -gGAUGUGGcuuacgaagguuCCGGCUCUggCGACUGGCGc -3'
miRNA:   3'- uaUUACGUU------------GGCCGGGG--GCUGACCGU- -5'
1043 5' -57.8 NC_000924.1 + 16385 0.66 0.575558
Target:  5'- cUGAUGguGCCcauGCCCCCc-CUGGCu -3'
miRNA:   3'- uAUUACguUGGc--CGGGGGcuGACCGu -5'
1043 5' -57.8 NC_000924.1 + 36172 0.66 0.5434
Target:  5'- ---cUGCAACCGGCaCCCUGAauguuCUGcuGCGu -3'
miRNA:   3'- uauuACGUUGGCCG-GGGGCU-----GAC--CGU- -5'
1043 5' -57.8 NC_000924.1 + 39015 0.68 0.450276
Target:  5'- cGUGggGaGACUGGCCCCCGAggugaacCUGGUc -3'
miRNA:   3'- -UAUuaCgUUGGCCGGGGGCU-------GACCGu -5'
1043 5' -57.8 NC_000924.1 + 49697 0.68 0.431935
Target:  5'- -gGAUGCAGCCGGaaagagCCaCgGcACUGGCAg -3'
miRNA:   3'- uaUUACGUUGGCCg-----GG-GgC-UGACCGU- -5'
1043 5' -57.8 NC_000924.1 + 34806 0.68 0.422458
Target:  5'- gAUAcgGaCAACCGGCgCaCCCGcGCUGGUc -3'
miRNA:   3'- -UAUuaC-GUUGGCCG-G-GGGC-UGACCGu -5'
1043 5' -57.8 NC_000924.1 + 25454 0.7 0.359787
Target:  5'- ---uUGCuuCCGGCUgaCUGACUGGCGc -3'
miRNA:   3'- uauuACGuuGGCCGGg-GGCUGACCGU- -5'
1043 5' -57.8 NC_000924.1 + 42753 0.7 0.35138
Target:  5'- uUAcgGCGAuCCGGUugaCCCUGGCUGGUc -3'
miRNA:   3'- uAUuaCGUU-GGCCG---GGGGCUGACCGu -5'
1043 5' -57.8 NC_000924.1 + 46725 0.71 0.289212
Target:  5'- ---cUGCGauACCuGCCCCCGugUGGUu -3'
miRNA:   3'- uauuACGU--UGGcCGGGGGCugACCGu -5'
1043 5' -57.8 NC_000924.1 + 27886 1.07 0.000776
Target:  5'- gAUAAUGCAACCGGCCCCCGACUGGCAg -3'
miRNA:   3'- -UAUUACGUUGGCCGGGGGCUGACCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.