miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10430 3' -50.1 NC_002687.1 + 13281 0.66 0.999796
Target:  5'- -gGAGCGuaaacaGCugGUUCCCGAa-- -3'
miRNA:   3'- caCUCGCucaa--CGugCAAGGGUUaug -5'
10430 3' -50.1 NC_002687.1 + 25941 0.66 0.999743
Target:  5'- uGUGccaGGCGAGggaGCGCGUagaaaCCAAUGCc -3'
miRNA:   3'- -CAC---UCGCUCaa-CGUGCAag---GGUUAUG- -5'
10430 3' -50.1 NC_002687.1 + 85006 0.66 0.999743
Target:  5'- aUGAGCuGAGUucgGUgACGUUCCCAc--- -3'
miRNA:   3'- cACUCG-CUCAa--CG-UGCAAGGGUuaug -5'
10430 3' -50.1 NC_002687.1 + 202870 0.67 0.999598
Target:  5'- -aGAGCGAuGUUGCGcCGUUCauaucGUACa -3'
miRNA:   3'- caCUCGCU-CAACGU-GCAAGggu--UAUG- -5'
10430 3' -50.1 NC_002687.1 + 38979 0.67 0.999598
Target:  5'- -cGAGCGAGggaaaggGCACGgaugaUUUCCAggGCg -3'
miRNA:   3'- caCUCGCUCaa-----CGUGC-----AAGGGUuaUG- -5'
10430 3' -50.1 NC_002687.1 + 206276 0.67 0.999386
Target:  5'- -aGAGCu-GUUGUACGUggcaaaccuUCCCAuUACa -3'
miRNA:   3'- caCUCGcuCAACGUGCA---------AGGGUuAUG- -5'
10430 3' -50.1 NC_002687.1 + 158306 0.67 0.999386
Target:  5'- aUGAGCGAGUgaugGCGCGUcguaUCaucaCGAaACa -3'
miRNA:   3'- cACUCGCUCAa---CGUGCA----AGg---GUUaUG- -5'
10430 3' -50.1 NC_002687.1 + 303304 0.67 0.999084
Target:  5'- -cGAG-GGGUUGCACGUgggCGGUGCg -3'
miRNA:   3'- caCUCgCUCAACGUGCAaggGUUAUG- -5'
10430 3' -50.1 NC_002687.1 + 45850 0.68 0.998891
Target:  5'- ---uGCGAGgggUGCAgGUaaUCCCAGUAg -3'
miRNA:   3'- cacuCGCUCa--ACGUgCA--AGGGUUAUg -5'
10430 3' -50.1 NC_002687.1 + 146665 0.68 0.998663
Target:  5'- uUGAGUucGAGcUGCACGUggUCGAUGCg -3'
miRNA:   3'- cACUCG--CUCaACGUGCAagGGUUAUG- -5'
10430 3' -50.1 NC_002687.1 + 74955 0.7 0.993334
Target:  5'- -gGGGUGAG--GCACGUUUCCAAggACa -3'
miRNA:   3'- caCUCGCUCaaCGUGCAAGGGUUa-UG- -5'
10430 3' -50.1 NC_002687.1 + 248147 0.7 0.991258
Target:  5'- -aGGGCGAGUucgGCugGUacaaCCUGAUACg -3'
miRNA:   3'- caCUCGCUCAa--CGugCAa---GGGUUAUG- -5'
10430 3' -50.1 NC_002687.1 + 322462 1.09 0.020703
Target:  5'- uGUGAGCGAGUUGCACGUUCCCAAUACc -3'
miRNA:   3'- -CACUCGCUCAACGUGCAAGGGUUAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.