miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10431 3' -51.4 NC_002687.1 + 167297 0.66 0.999609
Target:  5'- ---aGUCGGgggGUGUGuuccCGGC-GUACAGc -3'
miRNA:   3'- caaaCAGCCa--CACAU----GCCGcCAUGUC- -5'
10431 3' -51.4 NC_002687.1 + 316291 0.66 0.999507
Target:  5'- --aUGUCGGgauccgGUcaugaugGCGGUGGUGCAa -3'
miRNA:   3'- caaACAGCCaca---CA-------UGCCGCCAUGUc -5'
10431 3' -51.4 NC_002687.1 + 307638 0.66 0.999396
Target:  5'- --gUGgCGGUGgugGUgcuggcacgggcgGCGGCGGUGCuGg -3'
miRNA:   3'- caaACaGCCACa--CA-------------UGCCGCCAUGuC- -5'
10431 3' -51.4 NC_002687.1 + 325400 0.66 0.999277
Target:  5'- --cUGUCGGUGca-ACGGCGGagaGCAa -3'
miRNA:   3'- caaACAGCCACacaUGCCGCCa--UGUc -5'
10431 3' -51.4 NC_002687.1 + 85437 0.67 0.998939
Target:  5'- -gUUGUCGGgacagaggGUGUgGCGGCGaUugGGg -3'
miRNA:   3'- caAACAGCCa-------CACA-UGCCGCcAugUC- -5'
10431 3' -51.4 NC_002687.1 + 278727 0.67 0.998939
Target:  5'- -gUUGUCGGUG-GUGcCGGgGGaGCGc -3'
miRNA:   3'- caAACAGCCACaCAU-GCCgCCaUGUc -5'
10431 3' -51.4 NC_002687.1 + 308012 0.67 0.997814
Target:  5'- uGUUUGaCGGUGcUGUcccgaccggucccACGGCGaGUACAu -3'
miRNA:   3'- -CAAACaGCCAC-ACA-------------UGCCGC-CAUGUc -5'
10431 3' -51.4 NC_002687.1 + 155158 0.68 0.997464
Target:  5'- ---cG-CGGUGUcUACGGCGGUguGCAc -3'
miRNA:   3'- caaaCaGCCACAcAUGCCGCCA--UGUc -5'
10431 3' -51.4 NC_002687.1 + 200996 0.68 0.996975
Target:  5'- ---gGUCGGUcGUgagguaucucugaGUACGGCGauGUGCAGg -3'
miRNA:   3'- caaaCAGCCA-CA-------------CAUGCCGC--CAUGUC- -5'
10431 3' -51.4 NC_002687.1 + 83408 0.68 0.995948
Target:  5'- ---cGUCGGUGUGaACGaCGGgGCGGu -3'
miRNA:   3'- caaaCAGCCACACaUGCcGCCaUGUC- -5'
10431 3' -51.4 NC_002687.1 + 69056 0.68 0.995302
Target:  5'- --gUGgCGGUG-GUGuCGGCGGUGCc- -3'
miRNA:   3'- caaACaGCCACaCAU-GCCGCCAUGuc -5'
10431 3' -51.4 NC_002687.1 + 317824 0.69 0.992847
Target:  5'- -gUUGUCGGUGgccaUGUgGCGGCGGaACc- -3'
miRNA:   3'- caAACAGCCAC----ACA-UGCCGCCaUGuc -5'
10431 3' -51.4 NC_002687.1 + 253442 0.69 0.991832
Target:  5'- ---aGgCGGcGUGUGCGGCGGUGa-- -3'
miRNA:   3'- caaaCaGCCaCACAUGCCGCCAUguc -5'
10431 3' -51.4 NC_002687.1 + 281784 0.7 0.989463
Target:  5'- -gUUG-CGcGUGUGggaACGGCGGggGCAGg -3'
miRNA:   3'- caAACaGC-CACACa--UGCCGCCa-UGUC- -5'
10431 3' -51.4 NC_002687.1 + 72555 0.71 0.981192
Target:  5'- ---cGgCGGUGUGU-CGGCGGcgGCGGc -3'
miRNA:   3'- caaaCaGCCACACAuGCCGCCa-UGUC- -5'
10431 3' -51.4 NC_002687.1 + 280154 0.73 0.943084
Target:  5'- --cUGUCGGUGUGa--GGUGGUAUAc -3'
miRNA:   3'- caaACAGCCACACaugCCGCCAUGUc -5'
10431 3' -51.4 NC_002687.1 + 325523 1.01 0.052436
Target:  5'- cGUUUGUCGGUGgGUACGGCGGUACAGg -3'
miRNA:   3'- -CAAACAGCCACaCAUGCCGCCAUGUC- -5'
10431 3' -51.4 NC_002687.1 + 325155 1.1 0.014872
Target:  5'- cGUUUGUCGGUGUGUACGGCGGUACAGg -3'
miRNA:   3'- -CAAACAGCCACACAUGCCGCCAUGUC- -5'
10431 3' -51.4 NC_002687.1 + 324388 1.1 0.014872
Target:  5'- cGUUUGUCGGUGUGUACGGCGGUACAGg -3'
miRNA:   3'- -CAAACAGCCACACAUGCCGCCAUGUC- -5'
10431 3' -51.4 NC_002687.1 + 324004 1.1 0.014872
Target:  5'- cGUUUGUCGGUGUGUACGGCGGUACAGg -3'
miRNA:   3'- -CAAACAGCCACACAUGCCGCCAUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.