miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10431 5' -61.5 NC_002687.1 + 85886 0.66 0.836841
Target:  5'- gGCCacguggUCCUGCCGcGCCGgCGggaCCAGCGGGu -3'
miRNA:   3'- -UGGa-----AGGGCGGC-CGGU-GC---GGUCGUUU- -5'
10431 5' -61.5 NC_002687.1 + 85828 0.66 0.829084
Target:  5'- cGCUggUCCCGCUGGUCcCGCUGGUc-- -3'
miRNA:   3'- -UGGa-AGGGCGGCCGGuGCGGUCGuuu -5'
10431 5' -61.5 NC_002687.1 + 225235 0.66 0.825937
Target:  5'- cCCUUCCUcuugcguGCCGaccgugccggcgccGCCGCGUCGGCGGc -3'
miRNA:   3'- uGGAAGGG-------CGGC--------------CGGUGCGGUCGUUu -5'
10431 5' -61.5 NC_002687.1 + 121495 0.66 0.821171
Target:  5'- uCCgagggUUCCGCCacgGGCCACGCC-GUGGAc -3'
miRNA:   3'- uGGa----AGGGCGG---CCGGUGCGGuCGUUU- -5'
10431 5' -61.5 NC_002687.1 + 307268 0.66 0.821171
Target:  5'- cACCg--CCGCCGcCCGUGCCAGCAc- -3'
miRNA:   3'- -UGGaagGGCGGCcGGUGCGGUCGUuu -5'
10431 5' -61.5 NC_002687.1 + 46414 0.66 0.821171
Target:  5'- aGCCggCCUGCa-GCCACGCCuuCAGAa -3'
miRNA:   3'- -UGGaaGGGCGgcCGGUGCGGucGUUU- -5'
10431 5' -61.5 NC_002687.1 + 158826 0.66 0.821171
Target:  5'- cGCCgUCgCCGCCGGUCGaaaGCCcggaGGCGGc -3'
miRNA:   3'- -UGGaAG-GGCGGCCGGUg--CGG----UCGUUu -5'
10431 5' -61.5 NC_002687.1 + 96738 0.66 0.804904
Target:  5'- cACCUUUCauccgcggCGCCGGCaccaagCACGCgAGCAAc -3'
miRNA:   3'- -UGGAAGG--------GCGGCCG------GUGCGgUCGUUu -5'
10431 5' -61.5 NC_002687.1 + 224488 0.66 0.804904
Target:  5'- cGCCa--CCGCCaccGCCAgCGCCAGCGc- -3'
miRNA:   3'- -UGGaagGGCGGc--CGGU-GCGGUCGUuu -5'
10431 5' -61.5 NC_002687.1 + 224853 0.66 0.796562
Target:  5'- aGCCg--CCGaCgCGGCgGCGCCGGCAc- -3'
miRNA:   3'- -UGGaagGGC-G-GCCGgUGCGGUCGUuu -5'
10431 5' -61.5 NC_002687.1 + 86103 0.66 0.788091
Target:  5'- cAUCUUCCCacgagGCCaGCgGgGCCAGCGGGg -3'
miRNA:   3'- -UGGAAGGG-----CGGcCGgUgCGGUCGUUU- -5'
10431 5' -61.5 NC_002687.1 + 248127 0.67 0.761975
Target:  5'- aACCUgauacgUCCaauGCUGGCCGgGCCgAGCAAc -3'
miRNA:   3'- -UGGA------AGGg--CGGCCGGUgCGG-UCGUUu -5'
10431 5' -61.5 NC_002687.1 + 131114 0.67 0.743145
Target:  5'- cACCUUCauGUCGGCagcuauauuccacCACGCCGGUAAc -3'
miRNA:   3'- -UGGAAGggCGGCCG-------------GUGCGGUCGUUu -5'
10431 5' -61.5 NC_002687.1 + 88567 0.68 0.716545
Target:  5'- cGCCgaaCUCG-CGGcCCGCGCCAGCGc- -3'
miRNA:   3'- -UGGaa-GGGCgGCC-GGUGCGGUCGUuu -5'
10431 5' -61.5 NC_002687.1 + 182556 0.68 0.716545
Target:  5'- cACCgUCCC-CaCGGCCAUGCCGgagcGCGAGg -3'
miRNA:   3'- -UGGaAGGGcG-GCCGGUGCGGU----CGUUU- -5'
10431 5' -61.5 NC_002687.1 + 94697 0.68 0.697881
Target:  5'- cGCCUaggUCUC-UCGGCCACGCCGuuccGCAAGg -3'
miRNA:   3'- -UGGA---AGGGcGGCCGGUGCGGU----CGUUU- -5'
10431 5' -61.5 NC_002687.1 + 95401 0.68 0.688474
Target:  5'- -aCUUCCaCGCCGGCCGucucCGCCAaCAu- -3'
miRNA:   3'- ugGAAGG-GCGGCCGGU----GCGGUcGUuu -5'
10431 5' -61.5 NC_002687.1 + 8311 0.68 0.688474
Target:  5'- cACCguuuUCCCGCCGGacaaccaUACGCgCAGUAGu -3'
miRNA:   3'- -UGGa---AGGGCGGCCg------GUGCG-GUCGUUu -5'
10431 5' -61.5 NC_002687.1 + 299038 0.69 0.669544
Target:  5'- gACCaaggUCCCGCCaagaagcagcgGGCCGCcauGCCAGCc-- -3'
miRNA:   3'- -UGGa---AGGGCGG-----------CCGGUG---CGGUCGuuu -5'
10431 5' -61.5 NC_002687.1 + 224524 0.69 0.660036
Target:  5'- uGCC--CCCGCCaccGCCAcCGCCAGCGc- -3'
miRNA:   3'- -UGGaaGGGCGGc--CGGU-GCGGUCGUuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.