Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10431 | 5' | -61.5 | NC_002687.1 | + | 323970 | 1.05 | 0.003478 |
Target: 5'- aACCUUCCCGCCGGCCACGCCAGCAAAc -3' miRNA: 3'- -UGGAAGGGCGGCCGGUGCGGUCGUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 324354 | 1.05 | 0.003478 |
Target: 5'- aACCUUCCCGCCGGCCACGCCAGCAAAc -3' miRNA: 3'- -UGGAAGGGCGGCCGGUGCGGUCGUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 325121 | 1.05 | 0.003478 |
Target: 5'- aACCUUCCCGCCGGCCACGCCAGCAAAc -3' miRNA: 3'- -UGGAAGGGCGGCCGGUGCGGUCGUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 324737 | 1.05 | 0.003478 |
Target: 5'- aACCUUCCCGCCGGCCACGCCAGCAAAc -3' miRNA: 3'- -UGGAAGGGCGGCCGGUGCGGUCGUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 135702 | 0.75 | 0.324379 |
Target: 5'- -aCUUCCCcguGCCGGCCACGCCuuuCAGAa -3' miRNA: 3'- ugGAAGGG---CGGCCGGUGCGGuc-GUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 325497 | 0.75 | 0.345492 |
Target: 5'- -------gGCCGGCCACGCCAGCAAAc -3' miRNA: 3'- uggaagggCGGCCGGUGCGGUCGUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 85508 | 0.73 | 0.414561 |
Target: 5'- cCCUggaCCCGCUGGUCcCGCCGGCGc- -3' miRNA: 3'- uGGAa--GGGCGGCCGGuGCGGUCGUuu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 159521 | 0.73 | 0.447863 |
Target: 5'- gACCUcCCCGCCgaguGGCUGCGCCuGGCGGu -3' miRNA: 3'- -UGGAaGGGCGG----CCGGUGCGG-UCGUUu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 330153 | 0.72 | 0.456418 |
Target: 5'- gGCCUcUCCuCCGGCCACGCCaccgGGCAc- -3' miRNA: 3'- -UGGAaGGGcGGCCGGUGCGG----UCGUuu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 100673 | 0.71 | 0.546246 |
Target: 5'- cGCCUUCaCCGUCGGCgACGC--GCAAAc -3' miRNA: 3'- -UGGAAG-GGCGGCCGgUGCGguCGUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 224524 | 0.69 | 0.660036 |
Target: 5'- uGCC--CCCGCCaccGCCAcCGCCAGCGc- -3' miRNA: 3'- -UGGaaGGGCGGc--CGGU-GCGGUCGUuu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 85730 | 0.69 | 0.660036 |
Target: 5'- cGCUggcCCCGCUGGCCcCGCUGGCc-- -3' miRNA: 3'- -UGGaa-GGGCGGCCGGuGCGGUCGuuu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 299038 | 0.69 | 0.669544 |
Target: 5'- gACCaaggUCCCGCCaagaagcagcgGGCCGCcauGCCAGCc-- -3' miRNA: 3'- -UGGa---AGGGCGG-----------CCGGUG---CGGUCGuuu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 8311 | 0.68 | 0.688474 |
Target: 5'- cACCguuuUCCCGCCGGacaaccaUACGCgCAGUAGu -3' miRNA: 3'- -UGGa---AGGGCGGCCg------GUGCG-GUCGUUu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 95401 | 0.68 | 0.688474 |
Target: 5'- -aCUUCCaCGCCGGCCGucucCGCCAaCAu- -3' miRNA: 3'- ugGAAGG-GCGGCCGGU----GCGGUcGUuu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 94697 | 0.68 | 0.697881 |
Target: 5'- cGCCUaggUCUC-UCGGCCACGCCGuuccGCAAGg -3' miRNA: 3'- -UGGA---AGGGcGGCCGGUGCGGU----CGUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 182556 | 0.68 | 0.716545 |
Target: 5'- cACCgUCCC-CaCGGCCAUGCCGgagcGCGAGg -3' miRNA: 3'- -UGGaAGGGcG-GCCGGUGCGGU----CGUUU- -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 88567 | 0.68 | 0.716545 |
Target: 5'- cGCCgaaCUCG-CGGcCCGCGCCAGCGc- -3' miRNA: 3'- -UGGaa-GGGCgGCC-GGUGCGGUCGUuu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 131114 | 0.67 | 0.743145 |
Target: 5'- cACCUUCauGUCGGCagcuauauuccacCACGCCGGUAAc -3' miRNA: 3'- -UGGAAGggCGGCCG-------------GUGCGGUCGUUu -5' |
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10431 | 5' | -61.5 | NC_002687.1 | + | 248127 | 0.67 | 0.761975 |
Target: 5'- aACCUgauacgUCCaauGCUGGCCGgGCCgAGCAAc -3' miRNA: 3'- -UGGA------AGGg--CGGCCGGUgCGG-UCGUUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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