miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10433 3' -56.6 NC_002687.1 + 210052 0.66 0.979897
Target:  5'- uUCCGUUUCCuGuUGACg--GGCUCCa- -3'
miRNA:   3'- gAGGCAAAGG-C-GCUGugaCCGAGGca -5'
10433 3' -56.6 NC_002687.1 + 97619 0.66 0.977758
Target:  5'- --aCGggUCCGcCGucggguuccACAUUGGCUCCGg -3'
miRNA:   3'- gagGCaaAGGC-GC---------UGUGACCGAGGCa -5'
10433 3' -56.6 NC_002687.1 + 57415 0.66 0.970336
Target:  5'- gUCCGguagCgUGCGAUACUGGUUCgGg -3'
miRNA:   3'- gAGGCaaa-G-GCGCUGUGACCGAGgCa -5'
10433 3' -56.6 NC_002687.1 + 315048 0.67 0.964494
Target:  5'- uCUuuGg--CgGCGACACUGGCaUCUGc -3'
miRNA:   3'- -GAggCaaaGgCGCUGUGACCG-AGGCa -5'
10433 3' -56.6 NC_002687.1 + 101063 0.67 0.961289
Target:  5'- uUCgaGUUUUa-CGACGCUGGCUCCa- -3'
miRNA:   3'- gAGg-CAAAGgcGCUGUGACCGAGGca -5'
10433 3' -56.6 NC_002687.1 + 81588 0.68 0.933216
Target:  5'- -aCCG-UUCCGCagaaGAUAUUGGCgUCCGUu -3'
miRNA:   3'- gaGGCaAAGGCG----CUGUGACCG-AGGCA- -5'
10433 3' -56.6 NC_002687.1 + 4525 0.68 0.92837
Target:  5'- aCUCCauugCCGCGAUACUacacgcGGCUCUGc -3'
miRNA:   3'- -GAGGcaaaGGCGCUGUGA------CCGAGGCa -5'
10433 3' -56.6 NC_002687.1 + 61377 0.69 0.906864
Target:  5'- -gCCGUUgCCGUucagguggaucaGGCACUcGGCUCCGa -3'
miRNA:   3'- gaGGCAAaGGCG------------CUGUGA-CCGAGGCa -5'
10433 3' -56.6 NC_002687.1 + 203276 0.69 0.900962
Target:  5'- -cCCGUcgaucUCCGCGAUGgUGGC-CCGUa -3'
miRNA:   3'- gaGGCAa----AGGCGCUGUgACCGaGGCA- -5'
10433 3' -56.6 NC_002687.1 + 239433 0.69 0.894853
Target:  5'- -cCCGUUUCCcucaaucaacGCGACgcacucuccggaGCUGGCUUCGa -3'
miRNA:   3'- gaGGCAAAGG----------CGCUG------------UGACCGAGGCa -5'
10433 3' -56.6 NC_002687.1 + 56876 0.7 0.882027
Target:  5'- --gCGUguaugCCGCGGCGCcGGUUCCGa -3'
miRNA:   3'- gagGCAaa---GGCGCUGUGaCCGAGGCa -5'
10433 3' -56.6 NC_002687.1 + 285846 0.7 0.875317
Target:  5'- gCUCCGUUUgCGCGagucaaccucGCGCUGGUUCa-- -3'
miRNA:   3'- -GAGGCAAAgGCGC----------UGUGACCGAGgca -5'
10433 3' -56.6 NC_002687.1 + 32668 0.72 0.772476
Target:  5'- gCUCUGgacUUCCGU-ACACUcGGCUCCGUu -3'
miRNA:   3'- -GAGGCa--AAGGCGcUGUGA-CCGAGGCA- -5'
10433 3' -56.6 NC_002687.1 + 332170 1.07 0.008861
Target:  5'- gCUCCGUUUCCGCGACACUGGCUCCGUc -3'
miRNA:   3'- -GAGGCAAAGGCGCUGUGACCGAGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.