miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10434 3' -61.9 NC_002687.1 + 78103 0.68 0.734883
Target:  5'- gGCC---GUGGCGGCGGCGUcUGaaacGGCa -3'
miRNA:   3'- -UGGuaaCGCCGCCGCCGCGaAC----CCGc -5'
10434 3' -61.9 NC_002687.1 + 18008 0.68 0.698345
Target:  5'- aGCCGcUGCGGCcGCaaCGCUUGGaGCGg -3'
miRNA:   3'- -UGGUaACGCCGcCGccGCGAACC-CGC- -5'
10434 3' -61.9 NC_002687.1 + 145327 0.69 0.679766
Target:  5'- cACCGagGUGGCugacgcggacaaGGCGGCGUacUGGGUGa -3'
miRNA:   3'- -UGGUaaCGCCG------------CCGCCGCGa-ACCCGC- -5'
10434 3' -61.9 NC_002687.1 + 292679 0.69 0.670423
Target:  5'- uACUGcUGUGGCGGUGGU-UUUGGGCa -3'
miRNA:   3'- -UGGUaACGCCGCCGCCGcGAACCCGc -5'
10434 3' -61.9 NC_002687.1 + 224198 0.69 0.670423
Target:  5'- gGCgGUggcgGUGGCGGUGGCGgUggcgGuGGCGa -3'
miRNA:   3'- -UGgUAa---CGCCGCCGCCGCgAa---C-CCGC- -5'
10434 3' -61.9 NC_002687.1 + 69040 0.69 0.632855
Target:  5'- gGCgAUggugGCGGCGGUGGCGgUggugucGGCGg -3'
miRNA:   3'- -UGgUAa---CGCCGCCGCCGCgAac----CCGC- -5'
10434 3' -61.9 NC_002687.1 + 316184 0.7 0.623446
Target:  5'- uUCGggUGCGGCGGCGGCacccgGCgc-GGCGg -3'
miRNA:   3'- uGGUa-ACGCCGCCGCCG-----CGaacCCGC- -5'
10434 3' -61.9 NC_002687.1 + 48973 0.71 0.548852
Target:  5'- ----aUGUGGCGGCGuGCGC--GGGCGu -3'
miRNA:   3'- ugguaACGCCGCCGC-CGCGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 224164 0.71 0.530583
Target:  5'- cGCUg--GCGGUGGCGGUGgCggGGGCa -3'
miRNA:   3'- -UGGuaaCGCCGCCGCCGC-GaaCCCGc -5'
10434 3' -61.9 NC_002687.1 + 72556 0.71 0.530583
Target:  5'- gGCgGUgugucgGCGGCGGCGGCGUc--GGCa -3'
miRNA:   3'- -UGgUAa-----CGCCGCCGCCGCGaacCCGc -5'
10434 3' -61.9 NC_002687.1 + 332407 0.72 0.503615
Target:  5'- gGCCGUUGUGGUccucaaGGCGGCGCaUGGcCa -3'
miRNA:   3'- -UGGUAACGCCG------CCGCCGCGaACCcGc -5'
10434 3' -61.9 NC_002687.1 + 298349 0.72 0.477258
Target:  5'- cGCCAgucggaaGCGGUGGCGGCcgcaacGCaaGGGCGu -3'
miRNA:   3'- -UGGUaa-----CGCCGCCGCCG------CGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 226810 0.73 0.460071
Target:  5'- uGCCGgugGCGGUGGCGGUgGCgguGGCGg -3'
miRNA:   3'- -UGGUaa-CGCCGCCGCCG-CGaacCCGC- -5'
10434 3' -61.9 NC_002687.1 + 298411 0.73 0.434923
Target:  5'- -----cGCGGCGGCGGcCGCggccuuaucaaUUGGGCGc -3'
miRNA:   3'- ugguaaCGCCGCCGCC-GCG-----------AACCCGC- -5'
10434 3' -61.9 NC_002687.1 + 224134 0.73 0.434923
Target:  5'- cGCUGgcgGUGGCGGUGGCGCU--GGCGc -3'
miRNA:   3'- -UGGUaa-CGCCGCCGCCGCGAacCCGC- -5'
10434 3' -61.9 NC_002687.1 + 63954 0.74 0.402668
Target:  5'- aACCAUUGCGGUGuucuacuuGUGGCGUUUGuGCGa -3'
miRNA:   3'- -UGGUAACGCCGC--------CGCCGCGAACcCGC- -5'
10434 3' -61.9 NC_002687.1 + 263178 0.74 0.394844
Target:  5'- cUCGUUGCGGCGGCaGGUGaCgaaGGGCa -3'
miRNA:   3'- uGGUAACGCCGCCG-CCGC-Gaa-CCCGc -5'
10434 3' -61.9 NC_002687.1 + 292789 0.75 0.335901
Target:  5'- aGCgGUgGCGGCcGCGGCGCacGGGCGa -3'
miRNA:   3'- -UGgUAaCGCCGcCGCCGCGaaCCCGC- -5'
10434 3' -61.9 NC_002687.1 + 307642 0.77 0.260024
Target:  5'- gGCgGUgGCGGUGGUGGUGCUggcacGGGCGg -3'
miRNA:   3'- -UGgUAaCGCCGCCGCCGCGAa----CCCGC- -5'
10434 3' -61.9 NC_002687.1 + 332266 1.07 0.002582
Target:  5'- cACCAUUGCGGCGGCGGCGCUUGGGCGu -3'
miRNA:   3'- -UGGUAACGCCGCCGCCGCGAACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.