miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10435 3' -51.4 NC_002687.1 + 138625 0.66 0.999423
Target:  5'- aGGCGucAGGAGUUUCgaaAugACAUCGc -3'
miRNA:   3'- cCCGU--UCCUCAGAGacgUugUGUAGU- -5'
10435 3' -51.4 NC_002687.1 + 227623 0.66 0.999423
Target:  5'- aGGGCAgagGGGAGgaggugaugCUgUGUAGCACGc-- -3'
miRNA:   3'- -CCCGU---UCCUCa--------GAgACGUUGUGUagu -5'
10435 3' -51.4 NC_002687.1 + 312759 0.66 0.999423
Target:  5'- --aCAAGGAGacaUCUGCGGCACAg-- -3'
miRNA:   3'- cccGUUCCUCag-AGACGUUGUGUagu -5'
10435 3' -51.4 NC_002687.1 + 100436 0.66 0.998899
Target:  5'- uGGGaccacuauCGAGGGGUCUCUcaaugucaagggugGUcACACAUCGc -3'
miRNA:   3'- -CCC--------GUUCCUCAGAGA--------------CGuUGUGUAGU- -5'
10435 3' -51.4 NC_002687.1 + 182471 0.66 0.998723
Target:  5'- -cGCGGGGAGUCUUcgaGCGACcuuggguACGUCGu -3'
miRNA:   3'- ccCGUUCCUCAGAGa--CGUUG-------UGUAGU- -5'
10435 3' -51.4 NC_002687.1 + 43263 0.67 0.998208
Target:  5'- gGGGCAGGG-GUCccaCUuaGCAacaucaaguacgACACAUCAg -3'
miRNA:   3'- -CCCGUUCCuCAGa--GA--CGU------------UGUGUAGU- -5'
10435 3' -51.4 NC_002687.1 + 332633 0.67 0.998208
Target:  5'- cGGG-AAGGGGUCUCagcaaaucgGCGACAUAg-- -3'
miRNA:   3'- -CCCgUUCCUCAGAGa--------CGUUGUGUagu -5'
10435 3' -51.4 NC_002687.1 + 332371 0.67 0.998208
Target:  5'- uGGGCGAGGAuGcUgUCUGaauACAUGUCGa -3'
miRNA:   3'- -CCCGUUCCU-C-AgAGACgu-UGUGUAGU- -5'
10435 3' -51.4 NC_002687.1 + 105685 0.67 0.997044
Target:  5'- -cGC-AGGcGUCUCUGCAACcaguCGUCGu -3'
miRNA:   3'- ccCGuUCCuCAGAGACGUUGu---GUAGU- -5'
10435 3' -51.4 NC_002687.1 + 43615 0.67 0.997044
Target:  5'- aGGCGGGGAgcgucgGUCUagacCUGCAGugUACGUCAa -3'
miRNA:   3'- cCCGUUCCU------CAGA----GACGUU--GUGUAGU- -5'
10435 3' -51.4 NC_002687.1 + 262999 0.68 0.995963
Target:  5'- uGGCcGGGAGUUUCUGgcaGACGCgAUCc -3'
miRNA:   3'- cCCGuUCCUCAGAGACg--UUGUG-UAGu -5'
10435 3' -51.4 NC_002687.1 + 29042 0.68 0.995902
Target:  5'- uGGCcuuGGAGUCgaucgCUGCcauugcaAGCACGUCGu -3'
miRNA:   3'- cCCGuu-CCUCAGa----GACG-------UUGUGUAGU- -5'
10435 3' -51.4 NC_002687.1 + 296742 0.68 0.995313
Target:  5'- aGGCAccGGAGUC-CUGCAagGCGCGgugCAc -3'
miRNA:   3'- cCCGUu-CCUCAGaGACGU--UGUGUa--GU- -5'
10435 3' -51.4 NC_002687.1 + 83287 0.69 0.992834
Target:  5'- uGGcCGGGGGGUUUgCUgGCAAUGCAUCGa -3'
miRNA:   3'- cCC-GUUCCUCAGA-GA-CGUUGUGUAGU- -5'
10435 3' -51.4 NC_002687.1 + 333033 1.11 0.012274
Target:  5'- uGGGCAAGGAGUCUCUGCAACACAUCAc -3'
miRNA:   3'- -CCCGUUCCUCAGAGACGUUGUGUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.