miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10435 5' -53.5 NC_002687.1 + 282425 0.66 0.996884
Target:  5'- -cCGCCGc--UGCUGccacuacGGCCCCUgCCg -3'
miRNA:   3'- caGCGGCuaaACGACu------CUGGGGAaGG- -5'
10435 5' -53.5 NC_002687.1 + 11073 0.66 0.996884
Target:  5'- -aCGCCcgccaUGCUGAGAgcguCCgCUUCCg -3'
miRNA:   3'- caGCGGcuaa-ACGACUCU----GGgGAAGG- -5'
10435 5' -53.5 NC_002687.1 + 243552 0.66 0.996884
Target:  5'- -cCGuuGAgaaguugGUUGAGGCCgCCUUCa -3'
miRNA:   3'- caGCggCUaaa----CGACUCUGG-GGAAGg -5'
10435 5' -53.5 NC_002687.1 + 130840 0.66 0.995786
Target:  5'- cUCGCCGAguucauuugGCUGAcggGGCCCguCUUCa -3'
miRNA:   3'- cAGCGGCUaaa------CGACU---CUGGG--GAAGg -5'
10435 5' -53.5 NC_002687.1 + 307185 0.66 0.995786
Target:  5'- gGUgGUgGAU---CUGAGACCCCUUUg -3'
miRNA:   3'- -CAgCGgCUAaacGACUCUGGGGAAGg -5'
10435 5' -53.5 NC_002687.1 + 225888 0.67 0.991619
Target:  5'- -aCGUCGGcUUcaccacccGUUGAGGCaCCCUUCCu -3'
miRNA:   3'- caGCGGCUaAA--------CGACUCUG-GGGAAGG- -5'
10435 5' -53.5 NC_002687.1 + 145820 0.67 0.991619
Target:  5'- -gCGCCGGggcGCUGGGucaGCUCCUcCCa -3'
miRNA:   3'- caGCGGCUaaaCGACUC---UGGGGAaGG- -5'
10435 5' -53.5 NC_002687.1 + 42893 0.68 0.980975
Target:  5'- uGUCGUacuUGAUgUUGCUaagGGGACCCCUgCCc -3'
miRNA:   3'- -CAGCG---GCUA-AACGA---CUCUGGGGAaGG- -5'
10435 5' -53.5 NC_002687.1 + 152192 0.68 0.980975
Target:  5'- cGUCGCCGAUaUGCaUGAcaccaaACCCCccgUCUg -3'
miRNA:   3'- -CAGCGGCUAaACG-ACUc-----UGGGGa--AGG- -5'
10435 5' -53.5 NC_002687.1 + 284631 0.69 0.971512
Target:  5'- uGUCGacaaCGGUUUGCUGAacaGCCgUUUCCu -3'
miRNA:   3'- -CAGCg---GCUAAACGACUc--UGGgGAAGG- -5'
10435 5' -53.5 NC_002687.1 + 46849 0.69 0.968694
Target:  5'- -gCGCUGAUUcgagcGCUGGGugUCCUuugUCCg -3'
miRNA:   3'- caGCGGCUAAa----CGACUCugGGGA---AGG- -5'
10435 5' -53.5 NC_002687.1 + 101143 0.71 0.934118
Target:  5'- uGUCGCCGA-UUGCc-AGGCCCUccgUUCCc -3'
miRNA:   3'- -CAGCGGCUaAACGacUCUGGGG---AAGG- -5'
10435 5' -53.5 NC_002687.1 + 332663 0.71 0.934118
Target:  5'- aGUUGCUGGUgaugugUUGCaGAGACUCCUUgCCc -3'
miRNA:   3'- -CAGCGGCUA------AACGaCUCUGGGGAA-GG- -5'
10435 5' -53.5 NC_002687.1 + 252553 0.73 0.881833
Target:  5'- uGUCGUCGG--UGgaGAGGCCCUUgUCCa -3'
miRNA:   3'- -CAGCGGCUaaACgaCUCUGGGGA-AGG- -5'
10435 5' -53.5 NC_002687.1 + 277409 0.74 0.837598
Target:  5'- -cUGCCGAgcUGCUGAGACgCUuauUUCCg -3'
miRNA:   3'- caGCGGCUaaACGACUCUGgGG---AAGG- -5'
10435 5' -53.5 NC_002687.1 + 221883 0.76 0.722466
Target:  5'- cUCGuCCGAagUUGCUGAGACacuuCCUUUCCg -3'
miRNA:   3'- cAGC-GGCUa-AACGACUCUG----GGGAAGG- -5'
10435 5' -53.5 NC_002687.1 + 196292 0.76 0.722466
Target:  5'- cUCGuCCGAagUUGCUGAGACacuuCCUUUCCg -3'
miRNA:   3'- cAGC-GGCUa-AACGACUCUG----GGGAAGG- -5'
10435 5' -53.5 NC_002687.1 + 332996 1.11 0.008621
Target:  5'- uGUCGCCGAUUUGCUGAGACCCCUUCCc -3'
miRNA:   3'- -CAGCGGCUAAACGACUCUGGGGAAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.