miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10439 5' -56.3 NC_002687.1 + 205989 0.66 0.986565
Target:  5'- aCGGUGUCG--GUGGUGuACcccucgagCGGGGUg -3'
miRNA:   3'- -GCCGCAGCaaCAUCAC-UGa-------GCCCCGg -5'
10439 5' -56.3 NC_002687.1 + 208457 0.66 0.983283
Target:  5'- gGGgGUCGacGUGGUGcCuUCGcGGGUCg -3'
miRNA:   3'- gCCgCAGCaaCAUCACuG-AGC-CCCGG- -5'
10439 5' -56.3 NC_002687.1 + 130724 0.66 0.98143
Target:  5'- uGGCgGUgGUgGUGGUGGCgguggCGGuGGCg -3'
miRNA:   3'- gCCG-CAgCAaCAUCACUGa----GCC-CCGg -5'
10439 5' -56.3 NC_002687.1 + 226946 0.66 0.98143
Target:  5'- uCGGCuccGUCGgcugccgGUGGUgGugUCGGuGGCUc -3'
miRNA:   3'- -GCCG---CAGCaa-----CAUCA-CugAGCC-CCGG- -5'
10439 5' -56.3 NC_002687.1 + 263015 0.67 0.974949
Target:  5'- gCGaCGUCGUUGuUGGUGGC-CGGGaGUUu -3'
miRNA:   3'- -GCcGCAGCAAC-AUCACUGaGCCC-CGG- -5'
10439 5' -56.3 NC_002687.1 + 280950 0.67 0.972461
Target:  5'- -aGCGUCGgcGggggccugGGUGGCggcagCGGcGGCCg -3'
miRNA:   3'- gcCGCAGCaaCa-------UCACUGa----GCC-CCGG- -5'
10439 5' -56.3 NC_002687.1 + 303504 0.67 0.969798
Target:  5'- uGGCGUCGUUGUuccUGAgCUUGGccuucgcgaaGGCUg -3'
miRNA:   3'- gCCGCAGCAACAuc-ACU-GAGCC----------CCGG- -5'
10439 5' -56.3 NC_002687.1 + 83897 0.67 0.963932
Target:  5'- uGGCGUCGgcaUGUuGUacaACUUugGGGGCCu -3'
miRNA:   3'- gCCGCAGCa--ACAuCAc--UGAG--CCCCGG- -5'
10439 5' -56.3 NC_002687.1 + 11413 0.68 0.960719
Target:  5'- gGGCGUUGUgUGUGGUgcggcgcaaGACUUGGuGCUg -3'
miRNA:   3'- gCCGCAGCA-ACAUCA---------CUGAGCCcCGG- -5'
10439 5' -56.3 NC_002687.1 + 293732 0.68 0.957313
Target:  5'- gGGUGUCcuGUUGUgucGGUGGC-CGGGGa- -3'
miRNA:   3'- gCCGCAG--CAACA---UCACUGaGCCCCgg -5'
10439 5' -56.3 NC_002687.1 + 215979 0.68 0.957313
Target:  5'- aGGuCGUCGguc---UGACUCGGGGUg -3'
miRNA:   3'- gCC-GCAGCaacaucACUGAGCCCCGg -5'
10439 5' -56.3 NC_002687.1 + 58049 0.68 0.945903
Target:  5'- gGGCG-CGUUGUuGUGAgaaaauCUCGGuGCCc -3'
miRNA:   3'- gCCGCaGCAACAuCACU------GAGCCcCGG- -5'
10439 5' -56.3 NC_002687.1 + 30237 0.68 0.941694
Target:  5'- aGGcCGUCGUUGUuggcGUGGucaugaugcUUCGGGGUa -3'
miRNA:   3'- gCC-GCAGCAACAu---CACU---------GAGCCCCGg -5'
10439 5' -56.3 NC_002687.1 + 308362 0.69 0.912067
Target:  5'- gCGGUGUaaagccgacgCGUgcagcgagGUAGcGACUUGGGGCUa -3'
miRNA:   3'- -GCCGCA----------GCAa-------CAUCaCUGAGCCCCGG- -5'
10439 5' -56.3 NC_002687.1 + 8161 1.11 0.005216
Target:  5'- uCGGCGUCGUUGUAGUGACUCGGGGCCu -3'
miRNA:   3'- -GCCGCAGCAACAUCACUGAGCCCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.