miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10441 3' -52.9 NC_002687.1 + 20375 0.66 0.998297
Target:  5'- gGCGGAuaucucGAGGCGA---CCUUGAuugcaagaaguACGCGa -3'
miRNA:   3'- -CGUCU------CUCCGCUagaGGAACU-----------UGCGC- -5'
10441 3' -52.9 NC_002687.1 + 196210 0.66 0.998297
Target:  5'- gGCGGAuaucucGAGGCGA---CCUUGAuugcaagaaguACGCGa -3'
miRNA:   3'- -CGUCU------CUCCGCUagaGGAACU-----------UGCGC- -5'
10441 3' -52.9 NC_002687.1 + 221802 0.66 0.998297
Target:  5'- gGCGGAuaucucGAGGCGA---CCUUGAuugcaagaaguACGCGa -3'
miRNA:   3'- -CGUCU------CUCCGCUagaGGAACU-----------UGCGC- -5'
10441 3' -52.9 NC_002687.1 + 156028 0.66 0.998297
Target:  5'- uGCuu-GAGGUGugcuUCUCCaaGAGCGUGa -3'
miRNA:   3'- -CGucuCUCCGCu---AGAGGaaCUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 212390 0.66 0.997983
Target:  5'- gGCgAGGGGGGCGg---CCUUGuuCGCGu -3'
miRNA:   3'- -CG-UCUCUCCGCuagaGGAACuuGCGC- -5'
10441 3' -52.9 NC_002687.1 + 266133 0.66 0.997208
Target:  5'- cGCuGGAGAGGCG-UCUCCUgugauUGAucaggucgGCGa -3'
miRNA:   3'- -CG-UCUCUCCGCuAGAGGA-----ACUug------CGC- -5'
10441 3' -52.9 NC_002687.1 + 183350 0.66 0.997208
Target:  5'- aGCAGAGAGGCGAaaaguUCgagCC---GAUGCc -3'
miRNA:   3'- -CGUCUCUCCGCU-----AGa--GGaacUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 149494 0.67 0.995398
Target:  5'- aGCGGGGAacacuuaucaagcuGGgGAUCagggaguguUCCaUUGGACGCGa -3'
miRNA:   3'- -CGUCUCU--------------CCgCUAG---------AGG-AACUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 330566 0.67 0.994146
Target:  5'- --cGAGAacGCGGUugcgCUCCUUGAACGCc -3'
miRNA:   3'- cguCUCUc-CGCUA----GAGGAACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 199853 0.68 0.992436
Target:  5'- uGCAGAGcacugaagaaGGGCGAgcgacucaauccuucCUCCUcgacGGACGCGa -3'
miRNA:   3'- -CGUCUC----------UCCGCUa--------------GAGGAa---CUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 87203 0.68 0.991278
Target:  5'- -gGGGGAGGCGGgaUCUauaCgagcGAACGCGa -3'
miRNA:   3'- cgUCUCUCCGCU--AGAg--Gaa--CUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 21043 0.68 0.991278
Target:  5'- uGUAGAGGGGU--UCUCCcugcauccUGGACGCu -3'
miRNA:   3'- -CGUCUCUCCGcuAGAGGa-------ACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 282707 0.68 0.990108
Target:  5'- cGCGGAGGauagcGGCaGUCUCC---GACGCGg -3'
miRNA:   3'- -CGUCUCU-----CCGcUAGAGGaacUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 76626 0.68 0.987402
Target:  5'- aCGGuGGcGGCGAcguggacguuucUCUCCUUGAcgucuuGCGCGa -3'
miRNA:   3'- cGUCuCU-CCGCU------------AGAGGAACU------UGCGC- -5'
10441 3' -52.9 NC_002687.1 + 199796 0.68 0.985851
Target:  5'- aGguG-GAGGCGAUCgacUCCUUcGAGgGCa -3'
miRNA:   3'- -CguCuCUCCGCUAG---AGGAA-CUUgCGc -5'
10441 3' -52.9 NC_002687.1 + 62109 0.69 0.984157
Target:  5'- cGUAGAGAGGgGGaUUCCUUGccACGUa -3'
miRNA:   3'- -CGUCUCUCCgCUaGAGGAACu-UGCGc -5'
10441 3' -52.9 NC_002687.1 + 8092 0.69 0.982314
Target:  5'- uGCAGAGAcGGUcacaGAUCUCgCUUGugUGCa -3'
miRNA:   3'- -CGUCUCU-CCG----CUAGAG-GAACuuGCGc -5'
10441 3' -52.9 NC_002687.1 + 267829 0.71 0.950274
Target:  5'- gGUGGAcAGGCGGUCgUCUgugGAGCGCGc -3'
miRNA:   3'- -CGUCUcUCCGCUAG-AGGaa-CUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 22622 0.71 0.941807
Target:  5'- aCGGGGAGGCG--CUCacgGGACGCGg -3'
miRNA:   3'- cGUCUCUCCGCuaGAGgaaCUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 309766 0.71 0.941807
Target:  5'- -uGGAGGGGCGAguuacguauaUCUC-UUGGugGCGg -3'
miRNA:   3'- cgUCUCUCCGCU----------AGAGgAACUugCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.