miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10441 3' -52.9 NC_002687.1 + 199853 0.68 0.992436
Target:  5'- uGCAGAGcacugaagaaGGGCGAgcgacucaauccuucCUCCUcgacGGACGCGa -3'
miRNA:   3'- -CGUCUC----------UCCGCUa--------------GAGGAa---CUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 15892 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCgUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 15697 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 149494 0.67 0.995398
Target:  5'- aGCGGGGAacacuuaucaagcuGGgGAUCagggaguguUCCaUUGGACGCGa -3'
miRNA:   3'- -CGUCUCU--------------CCgCUAG---------AGG-AACUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 330566 0.67 0.994146
Target:  5'- --cGAGAacGCGGUugcgCUCCUUGAACGCc -3'
miRNA:   3'- cguCUCUc-CGCUA----GAGGAACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 21043 0.68 0.991278
Target:  5'- uGUAGAGGGGU--UCUCCcugcauccUGGACGCu -3'
miRNA:   3'- -CGUCUCUCCGcuAGAGGa-------ACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 87203 0.68 0.991278
Target:  5'- -gGGGGAGGCGGgaUCUauaCgagcGAACGCGa -3'
miRNA:   3'- cgUCUCUCCGCU--AGAg--Gaa--CUUGCGC- -5'
10441 3' -52.9 NC_002687.1 + 199796 0.68 0.985851
Target:  5'- aGguG-GAGGCGAUCgacUCCUUcGAGgGCa -3'
miRNA:   3'- -CguCuCUCCGCUAG---AGGAA-CUUgCGc -5'
10441 3' -52.9 NC_002687.1 + 8092 0.69 0.982314
Target:  5'- uGCAGAGAcGGUcacaGAUCUCgCUUGugUGCa -3'
miRNA:   3'- -CGUCUCU-CCG----CUAGAG-GAACuuGCGc -5'
10441 3' -52.9 NC_002687.1 + 259844 0.71 0.941361
Target:  5'- gGCGGcGAuggacccguuguuGGCcAUCUCCUUGAugGCGu -3'
miRNA:   3'- -CGUCuCU-------------CCGcUAGAGGAACUugCGC- -5'
10441 3' -52.9 NC_002687.1 + 15104 0.72 0.932457
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCu -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 15962 0.72 0.932457
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCu -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 116872 0.72 0.911078
Target:  5'- --uGGGGGGCGAUCUUCUUgugcaGAACGgGg -3'
miRNA:   3'- cguCUCUCCGCUAGAGGAA-----CUUGCgC- -5'
10441 3' -52.9 NC_002687.1 + 13984 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 14176 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 14507 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 14768 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCgUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 14838 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 15034 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5'
10441 3' -52.9 NC_002687.1 + 15365 0.73 0.905178
Target:  5'- aGCAucAGGGGCGAUCgaCCaUGAGCGCa -3'
miRNA:   3'- -CGUc-UCUCCGCUAGa-GGaACUUGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.