miRNA display CGI


Results 1 - 20 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10442 3' -56.2 NC_002687.1 + 174947 0.66 0.98399
Target:  5'- aCGCCAggGUccaucgaGAGGGCGgaaCCGgUUCCa -3'
miRNA:   3'- gGCGGUa-CGa------CUCUCGCa--GGCgAAGG- -5'
10442 3' -56.2 NC_002687.1 + 85900 0.66 0.98399
Target:  5'- cCUGUCAUcGCUcgGAGuGaCGUCCGUcUCCu -3'
miRNA:   3'- -GGCGGUA-CGA--CUCuC-GCAGGCGaAGG- -5'
10442 3' -56.2 NC_002687.1 + 56046 0.66 0.982183
Target:  5'- aUGCUAagucccUGCuUGAGcGCGUCCuugacgacuGCUUCCa -3'
miRNA:   3'- gGCGGU------ACG-ACUCuCGCAGG---------CGAAGG- -5'
10442 3' -56.2 NC_002687.1 + 172194 0.66 0.982183
Target:  5'- -gGCCAgaucCUG-GAGUGgCCGCUUCUg -3'
miRNA:   3'- ggCGGUac--GACuCUCGCaGGCGAAGG- -5'
10442 3' -56.2 NC_002687.1 + 210082 0.66 0.980227
Target:  5'- aCgGCCAUGaucgaGAGAGCaGcccaccgauUCCGUUUCCu -3'
miRNA:   3'- -GgCGGUACga---CUCUCG-C---------AGGCGAAGG- -5'
10442 3' -56.2 NC_002687.1 + 24027 0.66 0.980227
Target:  5'- gCCGCUAcuucUGCUGcuGGCGUgcCUGCUUUUg -3'
miRNA:   3'- -GGCGGU----ACGACucUCGCA--GGCGAAGG- -5'
10442 3' -56.2 NC_002687.1 + 173646 0.66 0.97584
Target:  5'- gCGCUAUcgagGCUGcuGGCGUCC-CUUCUu -3'
miRNA:   3'- gGCGGUA----CGACucUCGCAGGcGAAGG- -5'
10442 3' -56.2 NC_002687.1 + 223725 0.66 0.97584
Target:  5'- aCGUCGUGaacaaAGAGCuGUCCGUUUCa -3'
miRNA:   3'- gGCGGUACgac--UCUCG-CAGGCGAAGg -5'
10442 3' -56.2 NC_002687.1 + 240842 0.66 0.97584
Target:  5'- aCCGguccaCAUGUUGAGuGGUGUCaguGUUUCCa -3'
miRNA:   3'- -GGCg----GUACGACUC-UCGCAGg--CGAAGG- -5'
10442 3' -56.2 NC_002687.1 + 239940 0.67 0.973398
Target:  5'- aUCGCUGUGCaGAGAGCGaUCauaugUCCa -3'
miRNA:   3'- -GGCGGUACGaCUCUCGC-AGgcga-AGG- -5'
10442 3' -56.2 NC_002687.1 + 298473 0.67 0.967985
Target:  5'- gCGCgagCGUGUcGAGAGCGUUCGg-UCCu -3'
miRNA:   3'- gGCG---GUACGaCUCUCGCAGGCgaAGG- -5'
10442 3' -56.2 NC_002687.1 + 308860 0.67 0.967985
Target:  5'- cCCGCUgcucgGUGgUGGGGGCGUCaGCgggggcUCCc -3'
miRNA:   3'- -GGCGG-----UACgACUCUCGCAGgCGa-----AGG- -5'
10442 3' -56.2 NC_002687.1 + 284720 0.67 0.965005
Target:  5'- gCCGCCucugGUGCUGucacuGCGauguugCCGCUUCg -3'
miRNA:   3'- -GGCGG----UACGACucu--CGCa-----GGCGAAGg -5'
10442 3' -56.2 NC_002687.1 + 298097 0.67 0.965005
Target:  5'- uUCGCCGUGUUGGGGGaaacacaGUCuuCGUUUgCCg -3'
miRNA:   3'- -GGCGGUACGACUCUCg------CAG--GCGAA-GG- -5'
10442 3' -56.2 NC_002687.1 + 22150 0.67 0.95847
Target:  5'- aCGCCAUGCccuguccuUGGGAGCGUUCa---CCa -3'
miRNA:   3'- gGCGGUACG--------ACUCUCGCAGGcgaaGG- -5'
10442 3' -56.2 NC_002687.1 + 202407 0.67 0.957422
Target:  5'- aCGCCGUGCaGAcguucgucaucacgGAGCGUCCucgcaGUUUCa -3'
miRNA:   3'- gGCGGUACGaCU--------------CUCGCAGG-----CGAAGg -5'
10442 3' -56.2 NC_002687.1 + 68768 0.68 0.954908
Target:  5'- aCCGCCuuuccaauuUGC-GAGGGCGUggGCUUCa -3'
miRNA:   3'- -GGCGGu--------ACGaCUCUCGCAggCGAAGg -5'
10442 3' -56.2 NC_002687.1 + 237083 0.68 0.954908
Target:  5'- uCCGCCuUGauacauCUGAGGGUGUCgacgcaCGCUUUCu -3'
miRNA:   3'- -GGCGGuAC------GACUCUCGCAG------GCGAAGG- -5'
10442 3' -56.2 NC_002687.1 + 325272 0.68 0.951145
Target:  5'- uCCGCC-UGCUGuaGGAGgGgaucCUGCUugUCCa -3'
miRNA:   3'- -GGCGGuACGAC--UCUCgCa---GGCGA--AGG- -5'
10442 3' -56.2 NC_002687.1 + 297992 0.69 0.934022
Target:  5'- gCCGCCAccGCUuccgacuggcGAG-GCGgCCGCUUUCg -3'
miRNA:   3'- -GGCGGUa-CGA----------CUCuCGCaGGCGAAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.