miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10442 5' -54.6 NC_002687.1 + 135312 0.66 0.995798
Target:  5'- cCGGGAgcucggUGUcCugGAUCUCGUccaucagccCGGGGUu -3'
miRNA:   3'- -GCCCU------ACAaGugCUAGGGCA---------GCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 298089 0.66 0.995158
Target:  5'- cCGGGGUGUUCGC---CgUGUUGGGGg -3'
miRNA:   3'- -GCCCUACAAGUGcuaGgGCAGCCUCg -5'
10442 5' -54.6 NC_002687.1 + 21011 0.66 0.994442
Target:  5'- -uGGGUGUagCACGAgagaCC-UCGGAGCu -3'
miRNA:   3'- gcCCUACAa-GUGCUag--GGcAGCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 257416 0.66 0.993972
Target:  5'- aGGGAUGUagguuaacaugcugcUCGCGAUgugCCCGacgcgcUCGG-GCc -3'
miRNA:   3'- gCCCUACA---------------AGUGCUA---GGGC------AGCCuCG- -5'
10442 5' -54.6 NC_002687.1 + 308794 0.67 0.991764
Target:  5'- cCGGGAggGggCGCGcccgcCCCGcCGGGGUc -3'
miRNA:   3'- -GCCCUa-CaaGUGCua---GGGCaGCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 297287 0.67 0.991449
Target:  5'- gGGGAgcagccaaAUGAUCucgauggCCGUCGGGGCg -3'
miRNA:   3'- gCCCUacaag---UGCUAG-------GGCAGCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 295796 0.67 0.988156
Target:  5'- gGGGGUGgccaucUCGCGcuuuuucuGUCCa-UCGGAGCu -3'
miRNA:   3'- gCCCUACa-----AGUGC--------UAGGgcAGCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 259558 0.67 0.988156
Target:  5'- -uGGAUGUcaaACGAUCCuCGaucUCGGGGUg -3'
miRNA:   3'- gcCCUACAag-UGCUAGG-GC---AGCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 227462 0.67 0.986714
Target:  5'- uGGGAUGUcUCACaaagGAUgUCCGUgGGAGg -3'
miRNA:   3'- gCCCUACA-AGUG----CUA-GGGCAgCCUCg -5'
10442 5' -54.6 NC_002687.1 + 182534 0.68 0.982887
Target:  5'- uCGuGAUGUUCACGAUguucgccaCCGUccccacggccaugcCGGAGCg -3'
miRNA:   3'- -GCcCUACAAGUGCUAg-------GGCA--------------GCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 223577 0.68 0.979563
Target:  5'- uCGGGcag--CGCGGUCCCGggGGAGg -3'
miRNA:   3'- -GCCCuacaaGUGCUAGGGCagCCUCg -5'
10442 5' -54.6 NC_002687.1 + 97189 0.68 0.976017
Target:  5'- aCGGGAcacaaggGUUCacgugccgcuaaacaACGAUCCUGUCGcgacauacGAGCa -3'
miRNA:   3'- -GCCCUa------CAAG---------------UGCUAGGGCAGC--------CUCG- -5'
10442 5' -54.6 NC_002687.1 + 49014 0.7 0.953669
Target:  5'- uGGGGUGUg---GAUCCgGUCuGAGCa -3'
miRNA:   3'- gCCCUACAagugCUAGGgCAGcCUCG- -5'
10442 5' -54.6 NC_002687.1 + 28937 0.7 0.949832
Target:  5'- uCGGcAUGUUCGcCGGUCCCGUCugaaGGAcGUg -3'
miRNA:   3'- -GCCcUACAAGU-GCUAGGGCAG----CCU-CG- -5'
10442 5' -54.6 NC_002687.1 + 234930 0.71 0.932401
Target:  5'- cCGGGAgaa-UAUGGUgCCCGUCGGaAGCu -3'
miRNA:   3'- -GCCCUacaaGUGCUA-GGGCAGCC-UCG- -5'
10442 5' -54.6 NC_002687.1 + 170743 0.71 0.932401
Target:  5'- uGcGGAUGgUCACGAUCCuCGUCaacaaccGAGCu -3'
miRNA:   3'- gC-CCUACaAGUGCUAGG-GCAGc------CUCG- -5'
10442 5' -54.6 NC_002687.1 + 241631 0.71 0.917105
Target:  5'- gGGGGUGUggAgGGUUgggCGUCGGAGCa -3'
miRNA:   3'- gCCCUACAagUgCUAGg--GCAGCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 294470 0.72 0.899906
Target:  5'- uCGGGAaauagauuUGggUCACGAUCCCGaCGGGa- -3'
miRNA:   3'- -GCCCU--------ACa-AGUGCUAGGGCaGCCUcg -5'
10442 5' -54.6 NC_002687.1 + 11468 0.72 0.887404
Target:  5'- aCGGGAUcGUgaAC-AUCCCGUaCGGGGCg -3'
miRNA:   3'- -GCCCUA-CAagUGcUAGGGCA-GCCUCG- -5'
10442 5' -54.6 NC_002687.1 + 196440 0.72 0.880851
Target:  5'- cCGGGAUGUucUUugGAggugCCC-UCGGAGg -3'
miRNA:   3'- -GCCCUACA--AGugCUa---GGGcAGCCUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.