miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10447 3' -51.3 NC_002687.1 + 265859 0.66 0.998911
Target:  5'- gGCGCu--GUACGGGGAGAGCGu--- -3'
miRNA:   3'- aCGUGuuuCGUGUUCUUCUCGCcgua -5'
10447 3' -51.3 NC_002687.1 + 18009 0.66 0.998911
Target:  5'- aGCGCGuAGCGCGcgaGGAGGAcgacuGUGGUAg -3'
miRNA:   3'- aCGUGUuUCGUGU---UCUUCU-----CGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 276718 0.66 0.998911
Target:  5'- cGuCACGAAGCugGGGcuGuGGCGGCu- -3'
miRNA:   3'- aC-GUGUUUCGugUUCuuC-UCGCCGua -5'
10447 3' -51.3 NC_002687.1 + 39215 0.66 0.998847
Target:  5'- gGCGacaGAAGCACAGGAAGaAGaaccgcgcuggaacUGGCAg -3'
miRNA:   3'- aCGUg--UUUCGUGUUCUUC-UC--------------GCCGUa -5'
10447 3' -51.3 NC_002687.1 + 269342 0.66 0.998685
Target:  5'- -uCACGAAGCACuucaaugaAAGAAGAGCuGCc- -3'
miRNA:   3'- acGUGUUUCGUG--------UUCUUCUCGcCGua -5'
10447 3' -51.3 NC_002687.1 + 197629 0.66 0.998685
Target:  5'- -uCACGAAGCACuucaaugaAAGAAGAGCuGCc- -3'
miRNA:   3'- acGUGUUUCGUG--------UUCUUCUCGcCGua -5'
10447 3' -51.3 NC_002687.1 + 263158 0.66 0.998685
Target:  5'- cGC-CGAAGUAaucGAAcGAGCGGCGUc -3'
miRNA:   3'- aCGuGUUUCGUguuCUU-CUCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 223220 0.66 0.998685
Target:  5'- -uCACGAAGCACuucaaugaAAGAAGAGCuGCc- -3'
miRNA:   3'- acGUGUUUCGUG--------UUCUUCUCGcCGua -5'
10447 3' -51.3 NC_002687.1 + 262908 0.66 0.998685
Target:  5'- gGC-CGAGGaCACGAGAGuuGUGGCGa -3'
miRNA:   3'- aCGuGUUUC-GUGUUCUUcuCGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 38884 0.66 0.998685
Target:  5'- gGCGCAAGGuCGCGGuuaucGAGGgcaccgguGGCGGCAc -3'
miRNA:   3'- aCGUGUUUC-GUGUU-----CUUC--------UCGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 252903 0.66 0.998531
Target:  5'- cGCACGGGGCGaauGAGAaacauuugucgggcuGGcAGCGGUAUg -3'
miRNA:   3'- aCGUGUUUCGUg--UUCU---------------UC-UCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 12913 0.66 0.99842
Target:  5'- aGCACcaggacccaAAAGCAgAAGAGGucgcaAGCGGCc- -3'
miRNA:   3'- aCGUG---------UUUCGUgUUCUUC-----UCGCCGua -5'
10447 3' -51.3 NC_002687.1 + 262445 0.66 0.99842
Target:  5'- cUGUuaaaACAAAGCACGGuGGAaAGCGGCu- -3'
miRNA:   3'- -ACG----UGUUUCGUGUU-CUUcUCGCCGua -5'
10447 3' -51.3 NC_002687.1 + 297050 0.66 0.99842
Target:  5'- gUGCGCGccuGCAgaacacCGAGGAGGGCagGGCGUa -3'
miRNA:   3'- -ACGUGUuu-CGU------GUUCUUCUCG--CCGUA- -5'
10447 3' -51.3 NC_002687.1 + 4155 0.66 0.99842
Target:  5'- cGCGCAGAGcCGCGuguAGuaucGCGGCAa -3'
miRNA:   3'- aCGUGUUUC-GUGUucuUCu---CGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 310720 0.66 0.998111
Target:  5'- aUGCGacaAGAGCGgAGGggGGGgGGgGUa -3'
miRNA:   3'- -ACGUg--UUUCGUgUUCuuCUCgCCgUA- -5'
10447 3' -51.3 NC_002687.1 + 157823 0.66 0.998111
Target:  5'- cUGCGCcaucuacuGGCugAAGA--AGCGGCAg -3'
miRNA:   3'- -ACGUGuu------UCGugUUCUucUCGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 239166 0.66 0.997752
Target:  5'- gGCGCAAAGUACcGGguGAuGUGGCc- -3'
miRNA:   3'- aCGUGUUUCGUGuUCuuCU-CGCCGua -5'
10447 3' -51.3 NC_002687.1 + 88512 0.66 0.997752
Target:  5'- uUGCACAGacauccgacgagGGCAUGAGAAGcAGUGGa-- -3'
miRNA:   3'- -ACGUGUU------------UCGUGUUCUUC-UCGCCgua -5'
10447 3' -51.3 NC_002687.1 + 6335 0.66 0.997752
Target:  5'- gGUGCuguGCGCGGGggGAcgaccaGCGGCGc -3'
miRNA:   3'- aCGUGuuuCGUGUUCuuCU------CGCCGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.