miRNA display CGI


Results 21 - 40 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10447 3' -51.3 NC_002687.1 + 41426 0.66 0.997752
Target:  5'- aGCGCGAGGUgaagcaacuGCAagAGAAGAuGgGGCAa -3'
miRNA:   3'- aCGUGUUUCG---------UGU--UCUUCU-CgCCGUa -5'
10447 3' -51.3 NC_002687.1 + 88512 0.66 0.997752
Target:  5'- uUGCACAGacauccgacgagGGCAUGAGAAGcAGUGGa-- -3'
miRNA:   3'- -ACGUGUU------------UCGUGUUCUUC-UCGCCgua -5'
10447 3' -51.3 NC_002687.1 + 295846 0.66 0.997713
Target:  5'- aUGCGCAuAGGCGCGgcguuacgguaguGGggGuugcgucGCGGCGUa -3'
miRNA:   3'- -ACGUGU-UUCGUGU-------------UCuuCu------CGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 83565 0.67 0.997339
Target:  5'- aGCGCAGAGguUGAGAuuguaGGUGGCGa -3'
miRNA:   3'- aCGUGUUUCguGUUCUuc---UCGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 8774 0.67 0.997339
Target:  5'- cGCACAccuCGCGGGAAGGGCGuacgaGCAg -3'
miRNA:   3'- aCGUGUuucGUGUUCUUCUCGC-----CGUa -5'
10447 3' -51.3 NC_002687.1 + 301403 0.67 0.997339
Target:  5'- aUGCuuUAGAGCACGAGGuguacaccGAGCuGGCGUu -3'
miRNA:   3'- -ACGu-GUUUCGUGUUCUu-------CUCG-CCGUA- -5'
10447 3' -51.3 NC_002687.1 + 253398 0.67 0.997339
Target:  5'- cGCAC--GGCcgGCAGGGAGAaCGGCGc -3'
miRNA:   3'- aCGUGuuUCG--UGUUCUUCUcGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 264291 0.67 0.996864
Target:  5'- cUGuCGCGAAGCucgcCAAG-AGAGUGGCc- -3'
miRNA:   3'- -AC-GUGUUUCGu---GUUCuUCUCGCCGua -5'
10447 3' -51.3 NC_002687.1 + 126507 0.67 0.996864
Target:  5'- cGCGCAcAAGUgaACAAGAAGcuUGGCGUg -3'
miRNA:   3'- aCGUGU-UUCG--UGUUCUUCucGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 35847 0.67 0.996864
Target:  5'- aGCGCAAcacauugcguGGCACGuGAGGcAGgGGCGg -3'
miRNA:   3'- aCGUGUU----------UCGUGUuCUUC-UCgCCGUa -5'
10447 3' -51.3 NC_002687.1 + 101032 0.67 0.996864
Target:  5'- uUGCGCGucGCcgACGGuGAAG-GCGGCAc -3'
miRNA:   3'- -ACGUGUuuCG--UGUU-CUUCuCGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 70349 0.67 0.996321
Target:  5'- aGCACAAAGacCGCcAGAGccgccAGCGGCAUg -3'
miRNA:   3'- aCGUGUUUC--GUGuUCUUc----UCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 55634 0.67 0.996321
Target:  5'- cGUACAGAGCgaaGCGGGAcacgucGCGGCAa -3'
miRNA:   3'- aCGUGUUUCG---UGUUCUucu---CGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 283353 0.67 0.996263
Target:  5'- cGCACAGcugcuacAGC-CAcGgcGGGCGGCAa -3'
miRNA:   3'- aCGUGUU-------UCGuGUuCuuCUCGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 47600 0.67 0.996263
Target:  5'- uUGCACAGcAGUACGcGGAAGAGUuagcgcuaucguuGGCGg -3'
miRNA:   3'- -ACGUGUU-UCGUGU-UCUUCUCG-------------CCGUa -5'
10447 3' -51.3 NC_002687.1 + 88083 0.67 0.995703
Target:  5'- aGCACGugGAGgACAAGc-GAGCGGUg- -3'
miRNA:   3'- aCGUGU--UUCgUGUUCuuCUCGCCGua -5'
10447 3' -51.3 NC_002687.1 + 5440 0.67 0.995703
Target:  5'- aUGCGCAAGuuguGCACGGGggGAagcaGUGGUu- -3'
miRNA:   3'- -ACGUGUUU----CGUGUUCuuCU----CGCCGua -5'
10447 3' -51.3 NC_002687.1 + 6264 0.67 0.995703
Target:  5'- aUGCGCAAGuuguGCACGGGggGAagcaGUGGUu- -3'
miRNA:   3'- -ACGUGUUU----CGUGUUCuuCU----CGCCGua -5'
10447 3' -51.3 NC_002687.1 + 226192 0.67 0.995502
Target:  5'- gUGCugAAGGUcgugcucaagccggACAGGggG-GUGGCGUg -3'
miRNA:   3'- -ACGugUUUCG--------------UGUUCuuCuCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 68946 0.67 0.995003
Target:  5'- gGCGaaguaGGAGCGCAcGAuucGAGUGGCAUu -3'
miRNA:   3'- aCGUg----UUUCGUGUuCUu--CUCGCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.