miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10447 3' -51.3 NC_002687.1 + 17498 0.98 0.064164
Target:  5'- uUGCGCAGAGCACAAGcAGAGCGGCAUg -3'
miRNA:   3'- -ACGUGUUUCGUGUUCuUCUCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 311134 0.69 0.979571
Target:  5'- gUGCACAugcGCACGAGucGGG-GGCAc -3'
miRNA:   3'- -ACGUGUuu-CGUGUUCuuCUCgCCGUa -5'
10447 3' -51.3 NC_002687.1 + 34296 0.69 0.988636
Target:  5'- aUGCGCGAcuGGCGCucGAAGAuuuGCGGgAUg -3'
miRNA:   3'- -ACGUGUU--UCGUGuuCUUCU---CGCCgUA- -5'
10447 3' -51.3 NC_002687.1 + 276718 0.66 0.998911
Target:  5'- cGuCACGAAGCugGGGcuGuGGCGGCu- -3'
miRNA:   3'- aC-GUGUUUCGugUUCuuC-UCGCCGua -5'
10447 3' -51.3 NC_002687.1 + 17831 0.87 0.280134
Target:  5'- uUGCACAGAGCACAAGcaaAGCGGCAUg -3'
miRNA:   3'- -ACGUGUUUCGUGUUCuucUCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 17387 0.85 0.337335
Target:  5'- uUGCGCAgcGCACAAGcAGAGCGGUAUg -3'
miRNA:   3'- -ACGUGUuuCGUGUUCuUCUCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 234005 0.74 0.869909
Target:  5'- cGaCACGAGGCugcCAAGAAGAugGCGGCGa -3'
miRNA:   3'- aC-GUGUUUCGu--GUUCUUCU--CGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 241957 0.74 0.884369
Target:  5'- cUGCACGGGGCAaGAGGgugcgAGAGgGGCGUg -3'
miRNA:   3'- -ACGUGUUUCGUgUUCU-----UCUCgCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 262198 0.71 0.955306
Target:  5'- aUGCGagaGAAGCACGGGAAGcaCGGCGa -3'
miRNA:   3'- -ACGUg--UUUCGUGUUCUUCucGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 283174 0.69 0.979571
Target:  5'- aGCAucCGAAGCggcaGCAAcAGGGGCGGCAg -3'
miRNA:   3'- aCGU--GUUUCG----UGUUcUUCUCGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 23667 0.7 0.969112
Target:  5'- gGCACGccAGCAgcAGAAGuAGCGGCAc -3'
miRNA:   3'- aCGUGUu-UCGUguUCUUC-UCGCCGUa -5'
10447 3' -51.3 NC_002687.1 + 218953 0.72 0.922173
Target:  5'- cGUACAGcAGCAUAAGAAGAGaCaGCAg -3'
miRNA:   3'- aCGUGUU-UCGUGUUCUUCUC-GcCGUa -5'
10447 3' -51.3 NC_002687.1 + 17609 0.95 0.093583
Target:  5'- uUGCACAGAGCACAAGAAcAGCGGCAUg -3'
miRNA:   3'- -ACGUGUUUCGUGUUCUUcUCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 328287 0.7 0.969112
Target:  5'- aGCACAaaAAGCAagauGAAGAGCGGa-- -3'
miRNA:   3'- aCGUGU--UUCGUguu-CUUCUCGCCgua -5'
10447 3' -51.3 NC_002687.1 + 17942 0.93 0.122003
Target:  5'- uUGCACAAAGCACAAGAAGAGC-GCAUg -3'
miRNA:   3'- -ACGUGUUUCGUGUUCUUCUCGcCGUA- -5'
10447 3' -51.3 NC_002687.1 + 23507 0.73 0.910527
Target:  5'- cUGCGCGAcAGCAaGGGggGGGgGGCAc -3'
miRNA:   3'- -ACGUGUU-UCGUgUUCuuCUCgCCGUa -5'
10447 3' -51.3 NC_002687.1 + 224874 0.7 0.977247
Target:  5'- gGCACGGucGGCACGcaAGAGGAagggggccccgGUGGCAUg -3'
miRNA:   3'- aCGUGUU--UCGUGU--UCUUCU-----------CGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 278820 0.69 0.985488
Target:  5'- cGCGgAGAGCAaaaGGAAGAGUGGgGa -3'
miRNA:   3'- aCGUgUUUCGUgu-UCUUCUCGCCgUa -5'
10447 3' -51.3 NC_002687.1 + 17720 0.92 0.14272
Target:  5'- uUGCGCAGAGCACAAacAGAGCGGCAUg -3'
miRNA:   3'- -ACGUGUUUCGUGUUcuUCUCGCCGUA- -5'
10447 3' -51.3 NC_002687.1 + 244967 0.77 0.747546
Target:  5'- cGCACGAAgaaaagauGCACucGGAAGAGCGGUGUg -3'
miRNA:   3'- aCGUGUUU--------CGUGu-UCUUCUCGCCGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.