miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10447 5' -57.2 NC_002687.1 + 122948 0.66 0.970782
Target:  5'- aGGUacGCCGGaCUUUCGugGGagaCGGUc- -3'
miRNA:   3'- gCUA--UGGCC-GGAAGCugCCg--GCCAuu -5'
10447 5' -57.2 NC_002687.1 + 236402 0.66 0.954908
Target:  5'- --cUGCCGGCgUUCG-CGaGCgCGGUAGa -3'
miRNA:   3'- gcuAUGGCCGgAAGCuGC-CG-GCCAUU- -5'
10447 5' -57.2 NC_002687.1 + 159214 0.66 0.954908
Target:  5'- ---cGuuGGCCUugUCGACGGCCGc--- -3'
miRNA:   3'- gcuaUggCCGGA--AGCUGCCGGCcauu -5'
10447 5' -57.2 NC_002687.1 + 118167 0.67 0.947176
Target:  5'- aCGGUGCCGcGCCUgcgUCGAacgaGGacgaCGGUGc -3'
miRNA:   3'- -GCUAUGGC-CGGA---AGCUg---CCg---GCCAUu -5'
10447 5' -57.2 NC_002687.1 + 6312 0.67 0.947176
Target:  5'- cCGAUACCGGCCU----UGGCCaugggGGUGc -3'
miRNA:   3'- -GCUAUGGCCGGAagcuGCCGG-----CCAUu -5'
10447 5' -57.2 NC_002687.1 + 118257 0.67 0.947176
Target:  5'- aCGGUGCCGcGCCUgcgUCGAacgaGGacgaCGGUGc -3'
miRNA:   3'- -GCUAUGGC-CGGA---AGCUg---CCg---GCCAUu -5'
10447 5' -57.2 NC_002687.1 + 307628 0.68 0.913525
Target:  5'- uGGUGCUGGCaCgggCGGCGG-CGGUGc -3'
miRNA:   3'- gCUAUGGCCG-Gaa-GCUGCCgGCCAUu -5'
10447 5' -57.2 NC_002687.1 + 226800 0.68 0.90201
Target:  5'- cCGGUGCCGguGCCggUGGCGGUggCGGUGg -3'
miRNA:   3'- -GCUAUGGC--CGGaaGCUGCCG--GCCAUu -5'
10447 5' -57.2 NC_002687.1 + 113943 0.69 0.876525
Target:  5'- gCGAUcGCgGuaGCCUUCGACGGuuGGUc- -3'
miRNA:   3'- -GCUA-UGgC--CGGAAGCUGCCggCCAuu -5'
10447 5' -57.2 NC_002687.1 + 252341 0.7 0.832598
Target:  5'- uGAUGCCGaggacGCCgcgCGACGGCCGa--- -3'
miRNA:   3'- gCUAUGGC-----CGGaa-GCUGCCGGCcauu -5'
10447 5' -57.2 NC_002687.1 + 28619 0.7 0.824677
Target:  5'- gGAacUCGGCaggugcUCGGCGGCCGGUGu -3'
miRNA:   3'- gCUauGGCCGga----AGCUGCCGGCCAUu -5'
10447 5' -57.2 NC_002687.1 + 200113 0.71 0.791506
Target:  5'- uGGUGCCGGCga-CGACGGCCGc--- -3'
miRNA:   3'- gCUAUGGCCGgaaGCUGCCGGCcauu -5'
10447 5' -57.2 NC_002687.1 + 280967 0.73 0.681705
Target:  5'- gGGUGgCGGCag-CGGCGGCCGGg-- -3'
miRNA:   3'- gCUAUgGCCGgaaGCUGCCGGCCauu -5'
10447 5' -57.2 NC_002687.1 + 26715 0.74 0.61438
Target:  5'- uCGGUAaaGGCCUUCguguaaagGACGGCCGGa-- -3'
miRNA:   3'- -GCUAUggCCGGAAG--------CUGCCGGCCauu -5'
10447 5' -57.2 NC_002687.1 + 18338 0.78 0.414544
Target:  5'- --uUACCGGCCgUCGAaGGCCGGUAu -3'
miRNA:   3'- gcuAUGGCCGGaAGCUgCCGGCCAUu -5'
10447 5' -57.2 NC_002687.1 + 17977 1.06 0.007843
Target:  5'- cCGAUACCGGCCUUCGACGGCCGGUAAa -3'
miRNA:   3'- -GCUAUGGCCGGAAGCUGCCGGCCAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.