Results 1 - 4 of 4 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1046 | 5' | -59.7 | NC_000924.1 | + | 38655 | 0.68 | 0.41497 |
Target: 5'- ---gGGGCCcCGGGGGCCUCaG-GGAGa -3' miRNA: 3'- cuggCCUGGaGUCCCUGGAG-CaCCUC- -5' |
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1046 | 5' | -59.7 | NC_000924.1 | + | 38978 | 0.76 | 0.129829 |
Target: 5'- aGCCGGACCaCAGGGACCgaugGGAGc -3' miRNA: 3'- cUGGCCUGGaGUCCCUGGagcaCCUC- -5' |
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1046 | 5' | -59.7 | NC_000924.1 | + | 39592 | 0.85 | 0.026708 |
Target: 5'- cGACCGGACCUCAGGGGCCgaagggCGacccgGGGGa -3' miRNA: 3'- -CUGGCCUGGAGUCCCUGGa-----GCa----CCUC- -5' |
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1046 | 5' | -59.7 | NC_000924.1 | + | 39076 | 1.08 | 0.000515 |
Target: 5'- aGACCGGACCUCAGGGACCUCGUGGAGa -3' miRNA: 3'- -CUGGCCUGGAGUCCCUGGAGCACCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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