miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10461 3' -52.8 NC_002687.1 + 246316 0.66 0.998539
Target:  5'- uGUGUCGGgagUGuUCGCGagaaaagCACGGACu -3'
miRNA:   3'- -CACAGCCa--GCuAGCGCaca----GUGCUUG- -5'
10461 3' -52.8 NC_002687.1 + 80646 0.66 0.998513
Target:  5'- gGUGUCGGcaucguacgauUCGAUCGCcagaguggaaggcGUgccGUCACGGAa -3'
miRNA:   3'- -CACAGCC-----------AGCUAGCG-------------CA---CAGUGCUUg -5'
10461 3' -52.8 NC_002687.1 + 328246 0.66 0.997946
Target:  5'- -cGUCGG-CGAUCGUGccaCACGAGa -3'
miRNA:   3'- caCAGCCaGCUAGCGCacaGUGCUUg -5'
10461 3' -52.8 NC_002687.1 + 305160 0.67 0.995539
Target:  5'- -cGUCGGUUGGgcggacguacuUCgGCGUGgacaaCGCGGACg -3'
miRNA:   3'- caCAGCCAGCU-----------AG-CGCACa----GUGCUUG- -5'
10461 3' -52.8 NC_002687.1 + 322261 0.67 0.995539
Target:  5'- -cGUUGGUCGAUCuGuCG-GUCACagagGAACa -3'
miRNA:   3'- caCAGCCAGCUAG-C-GCaCAGUG----CUUG- -5'
10461 3' -52.8 NC_002687.1 + 297254 0.67 0.994852
Target:  5'- -aGUCGGUCGGUCaguucgcuggGCGUG--ACGAAa -3'
miRNA:   3'- caCAGCCAGCUAG----------CGCACagUGCUUg -5'
10461 3' -52.8 NC_002687.1 + 297329 0.67 0.993835
Target:  5'- gGUGUCGG-CGGacugcuugcggaacUCGCGUGcggCGCGcGCg -3'
miRNA:   3'- -CACAGCCaGCU--------------AGCGCACa--GUGCuUG- -5'
10461 3' -52.8 NC_002687.1 + 205170 0.68 0.992267
Target:  5'- uUGUCGGg----CGCGUGuUCACGAGa -3'
miRNA:   3'- cACAGCCagcuaGCGCAC-AGUGCUUg -5'
10461 3' -52.8 NC_002687.1 + 2007 0.68 0.992267
Target:  5'- -aGUCGGUgaaGUCaGCGUGguaCACGAACg -3'
miRNA:   3'- caCAGCCAgc-UAG-CGCACa--GUGCUUG- -5'
10461 3' -52.8 NC_002687.1 + 42318 0.68 0.988743
Target:  5'- -gGUCGGUCGca-GCGgacGUCcACGAGCc -3'
miRNA:   3'- caCAGCCAGCuagCGCa--CAG-UGCUUG- -5'
10461 3' -52.8 NC_002687.1 + 145203 0.75 0.819185
Target:  5'- cUGUUGGuuUCGGgcagCGCGUGUCgGCGAACg -3'
miRNA:   3'- cACAGCC--AGCUa---GCGCACAG-UGCUUG- -5'
10461 3' -52.8 NC_002687.1 + 41963 1.1 0.011965
Target:  5'- uGUGUCGGUCGAUCGCGUGUCACGAACg -3'
miRNA:   3'- -CACAGCCAGCUAGCGCACAGUGCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.