miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10461 5' -59.1 NC_002687.1 + 41997 1.1 0.003725
Target:  5'- aCCGUCCGCGAACUCCGCGAGCCACCAc -3'
miRNA:   3'- -GGCAGGCGCUUGAGGCGCUCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 107748 0.67 0.897907
Target:  5'- uCCG-CCGCGGACUUgGCacGCCGCgAa -3'
miRNA:   3'- -GGCaGGCGCUUGAGgCGcuCGGUGgU- -5'
10461 5' -59.1 NC_002687.1 + 167525 0.67 0.903764
Target:  5'- uCCGUugcgCCGCGGaaGCUUCGCGgcaacgucgGGCCuCCAa -3'
miRNA:   3'- -GGCA----GGCGCU--UGAGGCGC---------UCGGuGGU- -5'
10461 5' -59.1 NC_002687.1 + 142881 0.66 0.947475
Target:  5'- cCCGUCguCGgGGuUUCCGUacuggggguaaGGGCCACCAa -3'
miRNA:   3'- -GGCAG--GCgCUuGAGGCG-----------CUCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 262641 0.7 0.797179
Target:  5'- gCGUCUGCcagaAACUCC-CG-GCCACCAa -3'
miRNA:   3'- gGCAGGCGc---UUGAGGcGCuCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 96489 0.7 0.797179
Target:  5'- ---cCCGCGAGCgaCGCGGGCCGCg- -3'
miRNA:   3'- ggcaGGCGCUUGagGCGCUCGGUGgu -5'
10461 5' -59.1 NC_002687.1 + 4141 0.69 0.851627
Target:  5'- -aGUCCGUaGAuCUCCGCGcagAGCCGCg- -3'
miRNA:   3'- ggCAGGCG-CUuGAGGCGC---UCGGUGgu -5'
10461 5' -59.1 NC_002687.1 + 238667 0.69 0.851627
Target:  5'- uCCGcCaUGCGGAUcguUCgGUGGGCCACCGa -3'
miRNA:   3'- -GGCaG-GCGCUUG---AGgCGCUCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 164909 0.68 0.858779
Target:  5'- aUCGUCCGuCGGAg-UCGUGAGCCucguCCAu -3'
miRNA:   3'- -GGCAGGC-GCUUgaGGCGCUCGGu---GGU- -5'
10461 5' -59.1 NC_002687.1 + 115914 0.67 0.897907
Target:  5'- gCUGcUCCGCGuACUuuGUGuGCCACg- -3'
miRNA:   3'- -GGC-AGGCGCuUGAggCGCuCGGUGgu -5'
10461 5' -59.1 NC_002687.1 + 180773 0.68 0.872558
Target:  5'- cUCGUCCGUGAGCaUCgGCGAagaagaucuGCUugCGu -3'
miRNA:   3'- -GGCAGGCGCUUG-AGgCGCU---------CGGugGU- -5'
10461 5' -59.1 NC_002687.1 + 91993 0.68 0.858779
Target:  5'- -gGUCgGCGAGCUCgGUGAGaCAuCCAa -3'
miRNA:   3'- ggCAGgCGCUUGAGgCGCUCgGU-GGU- -5'
10461 5' -59.1 NC_002687.1 + 115166 0.78 0.366164
Target:  5'- uCCGUCCGCaacgcacgccaGAGCUCCGau-GCCACCGg -3'
miRNA:   3'- -GGCAGGCG-----------CUUGAGGCgcuCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 217206 0.68 0.872558
Target:  5'- -gGUaCGCGGGCUCCGCGcccuguGCCGgCAa -3'
miRNA:   3'- ggCAgGCGCUUGAGGCGCu-----CGGUgGU- -5'
10461 5' -59.1 NC_002687.1 + 57336 0.74 0.550723
Target:  5'- uUGUUCGCGGGCggugUCCGUGcGCCGCCGa -3'
miRNA:   3'- gGCAGGCGCUUG----AGGCGCuCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 308241 0.69 0.851627
Target:  5'- cUCGUCCccuggGCGGGCUCCGCcccUCACCAc -3'
miRNA:   3'- -GGCAGG-----CGCUUGAGGCGcucGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 292426 0.68 0.891855
Target:  5'- aUCGcCCGUGcg--CCGCG-GCCGCCAc -3'
miRNA:   3'- -GGCaGGCGCuugaGGCGCuCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 259674 0.67 0.897907
Target:  5'- gCGUUCGCGGugUgucuugauCCGUGuGCCACUu -3'
miRNA:   3'- gGCAGGCGCUugA--------GGCGCuCGGUGGu -5'
10461 5' -59.1 NC_002687.1 + 88001 0.73 0.613094
Target:  5'- gUGUCCaGCGAACUCUuccuccccgugguuGCGAGCC-CCGg -3'
miRNA:   3'- gGCAGG-CGCUUGAGG--------------CGCUCGGuGGU- -5'
10461 5' -59.1 NC_002687.1 + 130480 0.69 0.821396
Target:  5'- cCCGUCaGCcaaauGAACUCgGCGAGgCCgACCAa -3'
miRNA:   3'- -GGCAGgCG-----CUUGAGgCGCUC-GG-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.