miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10461 5' -59.1 NC_002687.1 + 195344 0.68 0.872558
Target:  5'- aCGUCguCGUGAugUCCGCugacccGGGCCagGCCAa -3'
miRNA:   3'- gGCAG--GCGCUugAGGCG------CUCGG--UGGU- -5'
10461 5' -59.1 NC_002687.1 + 220935 0.68 0.872558
Target:  5'- aCGUCguCGUGAugUCCGCugacccGGGCCagGCCAa -3'
miRNA:   3'- gGCAG--GCGCUugAGGCG------CUCGG--UGGU- -5'
10461 5' -59.1 NC_002687.1 + 19509 0.68 0.872558
Target:  5'- aCGUCguCGUGAugUCCGCugacccGGGCCagGCCAa -3'
miRNA:   3'- gGCAG--GCGCUugAGGCG------CUCGG--UGGU- -5'
10461 5' -59.1 NC_002687.1 + 217206 0.68 0.872558
Target:  5'- -gGUaCGCGGGCUCCGCGcccuguGCCGgCAa -3'
miRNA:   3'- ggCAgGCGCUUGAGGCGCu-----CGGUgGU- -5'
10461 5' -59.1 NC_002687.1 + 180773 0.68 0.872558
Target:  5'- cUCGUCCGUGAGCaUCgGCGAagaagaucuGCUugCGu -3'
miRNA:   3'- -GGCAGGCGCUUG-AGgCGCU---------CGGugGU- -5'
10461 5' -59.1 NC_002687.1 + 40804 0.68 0.865757
Target:  5'- cCCGUUCGCGuguCUCgGuUGuGCCACCc -3'
miRNA:   3'- -GGCAGGCGCuu-GAGgC-GCuCGGUGGu -5'
10461 5' -59.1 NC_002687.1 + 164909 0.68 0.858779
Target:  5'- aUCGUCCGuCGGAg-UCGUGAGCCucguCCAu -3'
miRNA:   3'- -GGCAGGC-GCUUgaGGCGCUCGGu---GGU- -5'
10461 5' -59.1 NC_002687.1 + 91993 0.68 0.858779
Target:  5'- -gGUCgGCGAGCUCgGUGAGaCAuCCAa -3'
miRNA:   3'- ggCAGgCGCUUGAGgCGCUCgGU-GGU- -5'
10461 5' -59.1 NC_002687.1 + 308241 0.69 0.851627
Target:  5'- cUCGUCCccuggGCGGGCUCCGCcccUCACCAc -3'
miRNA:   3'- -GGCAGG-----CGCUUGAGGCGcucGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 4141 0.69 0.851627
Target:  5'- -aGUCCGUaGAuCUCCGCGcagAGCCGCg- -3'
miRNA:   3'- ggCAGGCG-CUuGAGGCGC---UCGGUGgu -5'
10461 5' -59.1 NC_002687.1 + 224451 0.69 0.851627
Target:  5'- gCGUCC-CGAACgUCCGCcAGCacCACCAc -3'
miRNA:   3'- gGCAGGcGCUUG-AGGCGcUCG--GUGGU- -5'
10461 5' -59.1 NC_002687.1 + 238667 0.69 0.851627
Target:  5'- uCCGcCaUGCGGAUcguUCgGUGGGCCACCGa -3'
miRNA:   3'- -GGCaG-GCGCUUG---AGgCGCUCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 130480 0.69 0.821396
Target:  5'- cCCGUCaGCcaaauGAACUCgGCGAGgCCgACCAa -3'
miRNA:   3'- -GGCAGgCG-----CUUGAGgCGCUC-GG-UGGU- -5'
10461 5' -59.1 NC_002687.1 + 99909 0.69 0.813461
Target:  5'- aUCGaUCgCGCGAGCgCCGCGAcGaCCGCCu -3'
miRNA:   3'- -GGC-AG-GCGCUUGaGGCGCU-C-GGUGGu -5'
10461 5' -59.1 NC_002687.1 + 223830 0.69 0.813461
Target:  5'- aCCGcaUCC-CGAACUCCGCcAGCacCACCGu -3'
miRNA:   3'- -GGC--AGGcGCUUGAGGCGcUCG--GUGGU- -5'
10461 5' -59.1 NC_002687.1 + 262641 0.7 0.797179
Target:  5'- gCGUCUGCcagaAACUCC-CG-GCCACCAa -3'
miRNA:   3'- gGCAGGCGc---UUGAGGcGCuCGGUGGU- -5'
10461 5' -59.1 NC_002687.1 + 96489 0.7 0.797179
Target:  5'- ---cCCGCGAGCgaCGCGGGCCGCg- -3'
miRNA:   3'- ggcaGGCGCUUGagGCGCUCGGUGgu -5'
10461 5' -59.1 NC_002687.1 + 154319 0.7 0.788846
Target:  5'- aCGUCgGCGAGCUgCGCaacuGCgACCAa -3'
miRNA:   3'- gGCAGgCGCUUGAgGCGcu--CGgUGGU- -5'
10461 5' -59.1 NC_002687.1 + 283583 0.7 0.788006
Target:  5'- gCCGUCCGCGAaauuaaucacacgGCccccgCCGCGccuggugcuGCCGCCc -3'
miRNA:   3'- -GGCAGGCGCU-------------UGa----GGCGCu--------CGGUGGu -5'
10461 5' -59.1 NC_002687.1 + 203019 0.71 0.727572
Target:  5'- gCGUCCaCGuGACUCCGUugGGGUCGCCAc -3'
miRNA:   3'- gGCAGGcGC-UUGAGGCG--CUCGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.